Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq16439 351 2e-94 seq3629 131 3e-28 seq15548 78.8 2e-12 seq11380 78.8 2e-12 >seq16439 Length=2923 Score = 351 bits (388), Expect = 2e-94 Identities = 259/299 (87%), Gaps = 6/299 (2%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG---GTC-ATCAGTAGGGTAAAACTAACCTGT 56 |||| ||| ||||| | || | |||| ||| |||||||||||||||||||||||| Sbjct 2564 TACTGAGCAGAATTTCTATCGTAACGACCTTAGTCTATCAGTAGGGTAAAACTAACCTGT 2505 Query 57 CTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTA 116 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2504 CTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTG 2445 Query 117 CCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCG 176 |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| Sbjct 2444 GCGAATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCG 2385 Query 177 CTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTA 236 ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 2384 CTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTT 2325 Query 237 GCCTCAAATTTCG--AGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 || ||||| | | | | | |||||||||||||||| ||||| || |||||| Sbjct 2324 GCTTCAAACTCGGAAACGTGCAAAAGGATCGATAGGCCGAGCTTTCGCTGTCCGTATTC 2266 >seq3629 Length=567 Score = 131 bits (144), Expect = 3e-28 Identities = 93/106 (88%), Gaps = 1/106 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 160 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 219 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAA 105 | ||||||||||||||||||||||||||||||||||||||||| || Sbjct 220 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAANAA 265 Score = 129 bits (142), Expect = 1e-27 Identities = 106/129 (82%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 165 AAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 264 AAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 323 Query 225 CTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGG 284 ||| |||||| || | ||| | | | |||||||| ||||| | |||||| || Sbjct 324 CTGACACCTCCTGCTTAAAACCCAAAAGCTCAGAAGGATCGTGAGGCCCCGCTTTCACGG 383 Query 285 TTTGTATTC 293 | ||||||| Sbjct 384 TCTGTATTC 392 >seq15548 Length=109350 Score = 78.8 bits (86), Expect = 2e-12 Identities = 76/99 (77%), Gaps = 9/99 (9%) Strand=Plus/Plus Query 62 GACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAA 121 |||| ||| || ||| ||||||||||| |||||||||||||| ||||||||| |||| Sbjct 19908 GACGATCTTAATTCAGTTCACGTTCCCTGTTAGTGGGTGAACATTCCAACGCTAGGCGAA 19967 Query 122 TTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGA 160 || || ||||||| ||||||||||||| || Sbjct 19968 TTATG---------AATAGGAACAGCCGACATCGAACGA 19997 >seq11380 Length=2504 Score = 78.8 bits (86), Expect = 2e-12 Identities = 123/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| |||||||||||||| ||| || ||| |||| ||||| ||||| Sbjct 465 CTGTCTCACGACGTTCTAAACCCAGCTCGCGTGCCGCTTTAATGGGCGAACAGCCCAACC 524 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||| | | | || | | ||| || ||||||||||||| | |||| Sbjct 525 CTTGGGACCTACTCCAGCCCC---AGGATGCGACGAGCCGACATCGAGGTGCCAAACCAT 581 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| |||| || ||||| | |||| |||||||| | |||| ||||| Sbjct 582 CCCGTCGATATGGACTCTTGGGGAAGATCAGCCTGTTATCCCCGGGGTACCTTTT 636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854238860160