Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq11380 392 1e-106 seq193 343 5e-92 >seq11380 Length=2504 Score = 392 bits (434), Expect = 1e-106 Identities = 272/306 (89%), Gaps = 2/306 (1%) Strand=Plus/Plus Query 1 TCGACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCG 60 ||||| || |||||| |||||||||||||||| ||||||||||||||| |||||||||| Sbjct 2198 TCGACCNCGAAGCTTA-TCCCCCGCAGTCTCACTGCCGCGCTCTCACTTACCGGCATTCG 2256 Query 61 GAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGT-GCTCTACCTCC 119 |||||||| |||| ||| |||| | || | ||| ||| |||| ||||| ||||||||||| Sbjct 2257 GAGTTTGGCTGATGTCGCTAAGATGGTAGTCCCGCTAAACCAACCAGTAGCTCTACCTCC 2316 Query 120 GGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAG 179 || ||||||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 2317 GGCAAGAAACACACGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGGAG 2376 Query 180 TTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGT 239 |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| Sbjct 2377 TTTGATTGGCCTTTCACCCCTACCCACAGCTCATCCCCTCAGTTTTCAACCTAAGTGGGT 2436 Query 240 TCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTT 299 ||| |||||||| |||||||| ||||||| ||| |||||| |||||||| ||||| Sbjct 2437 TCGCGCCTCCACGACGTCTTACCATCGCTTCACACTGGCCATGGGTAGATCACCCCGCTT 2496 Query 300 CGGGTC 305 |||||| Sbjct 2497 CGGGTC 2502 >seq193 Length=478 Score = 343 bits (380), Expect = 5e-92 Identities = 286/346 (83%), Gaps = 14/346 (4%) Strand=Plus/Plus Query 245 CCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT 304 |||||||| |||||||| ||||||| ||| |||||| |||||||| |||||||||| Sbjct 6 CCTCCACGACGTCTTACCATCGCTTCACACTGGCCATGGGTAGATCACCCCGCTTCGGGT 65 Query 305 CTTGATCGTGCCACTCATACGCCCTA-TTCGGACTCGCTTTCGCTACGGCTACCCCACAC 363 | | | |||||||| | | ||| || | | |||||||||||||||||||||||||| Sbjct 66 CCAGGACACGCCACTCAACCACACTAGTTAGTATTCGCTTTCGCTACGGCTACCCCACAC 125 Query 364 GGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCA 423 |||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||| Sbjct 126 GGGTTAACCTCGCGACGTGCCGCTGACTCGCAGGCTCATTCTTCAAAAGGCACGCCATCA 185 Query 424 CCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTA 483 | || | |||| |||| ||||||||||| || || |||||||||||||| Sbjct 186 C------CCCACAAGG-----AGGCTCTGACGGATTGTAAGCGCACGGTTTCAGGTACTA 234 Query 484 TTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGT 543 ||||||||||| || ||||||||||||||| |||||||||||||| | |||||||||||| Sbjct 235 TTTCACTCCCCTCCCGGGGTACTTTTCACCATTCCCTCACGGTAC-TATCCGCTATCGGT 293 Query 544 CACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACA 589 || ||| ||||||| ||||||| |||||||||||| |||||||||| Sbjct 294 CA-CAAAGAGTATTCAGGCTTACCGGGTGGTCCCGGCAGATTCACA 338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817257200640