Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq193 152 1e-34 >seq193 Length=478 Score = 152 bits (168), Expect = 1e-34 Identities = 232/316 (73%), Gaps = 11/316 (3%) Strand=Plus/Plus Query 78 TTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACG 137 |||| ||| |||| || |||||| ||| | || |||||| | | | || ||| || Sbjct 29 TTCACACTGGCCATGGG-TAGATCACCCCGCTT-CGGGTCCAGGACAC-GCCACTCAACC 85 Query 138 CC-CTAGTAAG-ACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTTTGCCAC-TG 194 | ||||| || | ||||||| ||||||| || ||| | ||| | | | | || || || Sbjct 86 ACACTAGTTAGTATTCGCTTT-CGCTACGGCTACCCCACACGGGTTAACCTCGCGACGTG 144 Query 195 AAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCC 254 | | |||| | | |||| | ||||||| |||| |||||| |||| | || ||| Sbjct 145 CCGCTGACTCGCAGGCTCATTCTTCAAAAGGCACGCCATCACCCCACAAGGAGG-CTCTG 203 Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCG 314 || | ||||| || ||||||||||| |||||||||||||||| ||||||| |||||| Sbjct 204 ACGGATTGTAAGCGCACGGTTTCAGGTACTATTTCACTCCCCTC-CCGGGGTACTTTTCA 262 Query 315 CCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGAT 374 || |||||||||||||||| | | |||||||||| || |||||| || ||| || | Sbjct 263 CCATTCCCTCACGGTACTA-TCCGCTATCGGTCACAAAG-AGTATTCAGGCTTACCGGGT 320 Query 375 GGTCCCCCCATATTCa 390 |||||| || ||||| Sbjct 321 GGTCCCGGCAGATTCA 336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241365834240