Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq13748 91.5 2e-16 seq13467 82.4 9e-14 >seq13748 Length=1948 Score = 91.5 bits (100), Expect = 2e-16 Identities = 81/99 (82%), Gaps = 3/99 (3%) Strand=Plus/Plus Query 12 ACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCGT- 70 ||||||| || || || | |||||||||||||||||||||| | |||||| |||| Sbjct 1086 ACCAACAGAACAGA-ACCAAGGTCCTATTCTATTATTCCATGCAACAGTATTCAGGCGAT 1144 Query 71 -AAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAA 108 | ||||||||||| |||||||||||| |||| |||||| Sbjct 1145 GATGCCTGCTTTGAGCACTCTAATTTTTTCAAAGTAAAA 1183 >seq13467 Length=1280 Score = 82.4 bits (90), Expect = 9e-14 Identities = 80/101 (79%), Gaps = 4/101 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| ||| ||||||||| |||||||| ||| |||| | |||| Sbjct 342 AAACCAACAAAATAGAACCGCG-GTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCG 400 Query 70 TAA---GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 |||||||||||||||||||||||| |||| ||||| Sbjct 401 GCTCGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595091253240