Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq11380 412 8e-113 >seq11380 Length=2504 Score = 412 bits (456), Expect = 8e-113 Identities = 337/409 (82%), Gaps = 9/409 (2%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 |||||||||||||||||||||||||||| |||||||||||| ||| ||| | ||||||| Sbjct 1792 CGACTACGCCTGTCGGCCTCGCCTTAGGCCCCGACTCACCCTGGGAAGATTAGCTTGACC 1851 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACACGCTACTCATGCCTG 120 | ||||||||| | | ||||||||| | ||| ||| ||||| ||||||||||||||| Sbjct 1852 CAGGAACCCTTAGTCATCCGGCGGACGAGTTTCTCACTCGTCATTCGCTACTCATGCCTG 1911 Query 121 CATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACGAC 180 ||||||||||||||| ||||| ||| ||||||| ||| ||||||| ||||||| Sbjct 1912 CATTCTCACTCGCATGGCCTCCAGCACTGGGTCACCCCGCACCTTCACCGGCCACACGAC 1971 Query 181 GCTCCCCTACCCAACCACAC----AGGTTG-----CCACAGCTTCGGCGGATAACTTAAG 231 ||||||||||| | || ||| || | | || | |||||||||| |||| || Sbjct 1972 GCTCCCCTACCAACCCCCACCAAAAGATGGAAGTTCCGCGGCTTCGGCGGTGTACTTGAG 2031 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 |||| ||||||| ||||||| ||| |||| |||||||||||||||||||||||||||||| Sbjct 2032 CCCCACTACATTGTCGGCGCAGAACCACTCGACCAGTGAGCTATTACGCACTCTTTCAAG 2091 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 |||||||||||| ||||||||||||||| ||||| ||| | ||||||||||| ||||| Sbjct 2092 GATGGCTGCTTCTAAGCCAACCTCCTGGCTGTCTTCGCGATCCCACATCCTTTTCCACTT 2151 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 ||| | ||||||||||||||| | |||| ||||||||||||||||| Sbjct 2152 AGTACACTCTTAGGGGCCTTAGCCGGCGATCCGGGCTGTTTCCCTCTCG 2200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177377904640