Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq11380 304 2e-80 >seq11380 Length=2504 Score = 304 bits (336), Expect = 2e-80 Identities = 229/268 (85%), Gaps = 1/268 (0%) Strand=Plus/Plus Query 8 GGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGC 67 |||||| |||||||||| |||||| |||||||| ||| || |||| ||||| |||| Sbjct 301 GGCTTCCCGCTTAGATGCTTTCAGCGGTTATCCCTCCCATACGTAGCCAACCAGCCATGC 360 Query 68 ACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGA 127 ||| |||||||| |||||||||| ||||| ||||||||||||||||||| ||| Sbjct 361 CACGGGCGTGACAACTGGCCCACCAGAGGTATGTCCGTCCCGGTCCTCTCGTACTAGGGA 420 Query 128 CAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTT 187 |||| |||||| |||| |||| | || ||||||| |||||||||||||| ||||||| Sbjct 421 CAGCCTTTCTCAAGTTTCA-ACGCGCGCGGCGGATAGAGACCGAACTGTCTCACGACGTT 479 Query 188 CTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTC 247 || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | Sbjct 480 CTAAACCCAGCTCGCGTGCCGCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTCC 539 Query 248 AGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||||||| ||||||||||||||| Sbjct 540 AGCCCCAGGATGCGACGAGCCGACATCG 567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780657342960