Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq17048 197 3e-48 seq13748 188 1e-45 >seq17048 Length=654 Score = 197 bits (218), Expect = 3e-48 Identities = 201/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 118 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 175 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 176 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 235 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 236 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 295 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 296 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 355 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 356 AAGTCCCTGCCCTTTGTA 373 >seq13748 Length=1948 Score = 188 bits (208), Expect = 1e-45 Identities = 203/263 (77%), Gaps = 8/263 (3%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGC--TCAAGCCG-ATGGAAGTTTGAGGCAATAACAGGTCT 127 ||||||||||||||| | |||| | ||||| ||| || ||| ||||||||||||| Sbjct 624 GCTTCTTAGAGGGACAAACGGCGTTTCAGCCGTATGAAAAA--GAG-CAATAACAGGTCT 568 Query 128 GTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCA 187 ||||||||||||||||| | ||||||||||||||||||||||| | || || | | Sbjct 567 GTGATGCCCTTAGATGTCCGGGGCCGCACGCGCGCTACACTGAAAAGATCAGCGTGCATA 508 Query 188 TC--ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 | |||| ||| |||| ||| || | || ||||| | ||||| | ||||| | | Sbjct 507 TGTTACCTACTCCGAAAGGAGCGGGCAACCCAGTGAAACTTTTTCGTGATTGGGATTGGG 448 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 |||| |||||||| | | |||||||||| || ||||||| | ||||||||| | || Sbjct 447 GATTGTAATTATTGTCCATGAACGAGGAATTCCCAGTAAGCACAAGTCATCAGCTTGTGT 388 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||||||| Sbjct 387 TGATTACGTCCCTGCCCTTTGTA 365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947021358080