Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq11380 250 8e-64 >seq11380 Length=2504 Score = 250 bits (276), Expect = 8e-64 Identities = 330/449 (73%), Gaps = 8/449 (2%) Strand=Plus/Minus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAG 94 |||||||| | ||||||||||||||||||| ||||| ||||| ||| | ||||| Sbjct 2502 GACCCGAAGCGGGGTGATCTACCCATGGCCAGTGTGAAGCGATGGTAAGACGTCGTGGAG 2443 Query 95 GTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTA 154 | |||||||||| | |||||||| | ||||||||||||||||||||||||||||||| | Sbjct 2442 GCGCGAACCCACTTAGGTTGAAAACTGAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCCA 2383 Query 155 AACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCA 214 | |||||| | ||||||||||||| |||||| |||||||| || || || | Sbjct 2382 ATCAAACTCCGTGATAGCTGGTTCTCCCCGAAATGCATTTAGGTGCAGCGTCGTGTGTTT 2323 Query 215 C-CATCGGGGGTAGAGC-ACTGTTATGGCTAGGGGGTCATTGCGACTTA-CCAAACCATT 271 | ||| |||||||| |||| | | ||| ||| | | | |||| | | | || Sbjct 2322 CTTGCCGGAGGTAGAGCTACTGGTTGGTTTAGCGGGAC-TACCATCTTAGCGACATCA-G 2265 Query 272 GCAAACTCCGAATGCGCATCAGTTTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCG 331 |||||||||||||| | ||| | ||||| |||||| ||| | |||| | || Sbjct 2264 CCAAACTCCGAATGCCGGTAAGTGAGAGCGCGGCAGTGAGACTGCGGGGGATAAGCTTCG 2205 Query 332 TGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAA 391 | ||||||| || | ||||| | ||||||||||| || | |||||| | Sbjct 2204 NGGTCGAGAGGGAAACAGCCCGGATCGCCGGCTAAGGCCCCTAAGAGTGTACTAAGTGGA 2145 Query 392 ACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTT 451 | || || || ||| || |||||||| |||| |||||||| |||||||||| || || Sbjct 2144 A--AAGGATGTGGGATCGCGAAGACAGCCAGGAGGTTGGCTTAGAAGCAGCCA-TCCTTG 2088 Query 452 AAAGAGTGCGTAACAGCTCACTAGTCGAG 480 ||||||||||||| |||||||| |||||| Sbjct 2087 AAAGAGTGCGTAATAGCTCACTGGTCGAG 2059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689281341440