Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq16439 500 3e-139 seq1894 349 1e-93 seq3629 118 3e-24 >seq16439 Length=2923 Score = 500 bits (554), Expect = 3e-139 Identities = 451/568 (79%), Gaps = 43/568 (8%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||| ||||||| ||| |||| ||||||||||||||||||| Sbjct 2232 CTTTTACTCTACGTGAGGTTTCTGTCCTCACTGAGCTAGCCTTAGGACACCTGCGTTACC 2173 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||||||| ||||||||| |||||||||| |||| || |||| || | | ||||| Sbjct 2172 TTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGGCAGTGTCCTCGATCAGGATC 2113 Query 127 GGCCCG---------------CGAA--------------GGAC-CTT-AACGCCAGAAAA 155 | ||| |||| |||| ||| || | |||||| Sbjct 2112 GAGCCGAGTTGCAAACAATCCCGAAAGATTGAATGGCCCGGACACTTGAAATCTAGAAAA 2053 Query 156 TGGTCGG------TGAAGACCAG-TTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGG 208 | | ||| | |||| |||| || || || |||||||| ||||||| || Sbjct 2052 ATGACCACCATATTGATGGCCAGCTTCCTTTTAATCGAGTAAGTAAAGAAACGATGAGAA 1993 Query 209 TAGTGGTATTTCACTTGCGCCGAAAC---GGCTCCCACTTATTCTACACCTCTCAAGTCA 265 |||||||||||||| || | | | |||||||||||||||||| ||||| ||| Sbjct 1992 TAGTGGTATTTCACCGTCGACTATTGCTAGCCTCCCACTTATTCTACACTTCTCATGTCT 1933 Query 266 TTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCC 325 |||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1932 CTTCACAGAGTCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTTTGCC 1873 Query 326 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 385 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1872 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 1813 Query 386 TAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTC 445 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1812 TAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTC 1753 Query 446 ATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGC 505 |||||| ||||||||||| |||||| ||||| ||||||| |||||||||| | | Sbjct 1752 ATAGTT--NCCCGCCGTTTAGTAGCGCTTAAGTGAATCTCTTCACATTGACATTCATACC 1695 Query 506 ACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||| Sbjct 1694 ACTGGGCAGAAATCACATTGCGTCAACA 1667 >seq1894 Length=375 Score = 349 bits (386), Expect = 1e-93 Identities = 210/221 (95%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| ||||| | | |||||||||||||||||| Sbjct 155 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAA 214 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 215 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGG 274 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 275 ATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATG 334 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCC 457 ||||||||||||||||||||||||||||||||||||||||| Sbjct 335 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCC 375 >seq3629 Length=567 Score = 118 bits (130), Expect = 3e-24 Identities = 103/128 (80%), Gaps = 5/128 (4%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||||||| Sbjct 426 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACC 485 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||| ||| ||||||||| ||||||||||||||| || |||| |||||| | Sbjct 486 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGGCACTGTC-----CCCGGAGC 540 Query 127 GGCCCGCG 134 || |||| Sbjct 541 GGGTCGCG 548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634891601280