Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq11380 827 0.0 >seq11380 Length=2504 Score = 827 bits (916), Expect = 0.0 Identities = 526/565 (93%), Gaps = 7/565 (1%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| ||| |||||| |||||||||||||||||||||||||||||| |||||||||||| Sbjct 702 TCGACCTGTCAGTCTCACAGTCAAGCTCCCTTGTGCACTTACACTCAACACCTGATTGCC 761 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| Sbjct 762 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACACTTTGGGAGG-CAACCGCCCCAG 820 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTT-AGATATCCA 179 |||||||||||||||||||||||||| ||||| ||||| ||||| ||||| || |||||| Sbjct 821 TTAAACTACCCACCAGGCACTGTCCCTAACCCGGATCACGGGCCGAGGTTCAGGTATCCA 880 Query 180 CTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAG 239 |||| |||||||||||||||||||||||||||||||||||| |||||||||| ||| || Sbjct 881 ATACGATCAGAGTGGTATTTCAACAACGACTCCACAACCACTGGCGTGGCCGCTTCACAG 940 Query 240 TCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC 299 ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| Sbjct 941 TCTCCCACCTATCCTACACAAACCGAACCGAACACCAATACCAAGCTATAGTGAAGGTCC 1000 Query 300 CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct 1001 CGGGGTCTTTTCGTCCTGCCGCGCGTAACGAGCATCTTTACTCGTACTGCAATTTCGCCG 1060 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1061 GGCCTGTGGTTGAGACAGCAGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 1120 Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1121 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTA 1180 Query 480 AATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCG 539 |||| |||| || ||||| || || || || ||||||||||||||||||||||| Sbjct 1181 AATTCTCCGCTTC---GACCACAAGG-GT-CTAACAGGTCCTCTTAACCTTCCAGCACCG 1235 Query 540 GGCAGGCGTCAGTCCGTATACCTCG 564 ||||||||||||||||||||| ||| Sbjct 1236 GGCAGGCGTCAGTCCGTATACATCG 1260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702078927360