Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq13748 437 3e-120 seq13467 385 1e-104 seq6793 75.2 3e-11 seq4784 75.2 3e-11 >seq13748 Length=1948 Score = 437 bits (484), Expect = 3e-120 Identities = 412/517 (80%), Gaps = 20/517 (4%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAG---AGCCCTGTATCAGTATTTATTGTCACT 56 || |||||||||||||| ||| | | ||| ||||| |||| ||||| | |||||| Sbjct 1410 GTGCTCATTCCAATTACGAGAACGCGTAAGCGAAGCCC-GTATTGTTATTTTTCGTCACT 1468 Query 57 ACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGC 116 |||||| || | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1469 ACCTCCTTGTTCCAAGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGC 1528 Query 117 CGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCAT 176 | | |||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 1529 CATCTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTACAACCAT 1588 Query 177 GGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCC 236 ||||||| || |||||||||||||||||||| |||||| | | ||| || ||||| Sbjct 1589 GGTAGGCATATAACCTACCATCGAAAGTTGATAAGGCAGACACTCGAAGGATATGTCGCC 1648 Query 237 GGCTCAAGGCCATGCGATTCGTTA-AGTTATTATGAATCACCA-----AGGAGCCCCGAA 290 ||| | |||||||||||| | | ||||||| || |||||| ||| | | | Sbjct 1649 GGCACGAGGCCATGCGATCAGCTGCAGTTATTCAGAGTCACCACAACAAGGTGTTTCCAC 1708 Query 291 GGGCGTTGGTTTTTTATCTAATAAATACACCCC---TTCCGAAGTCGGGGTTTTTAGCAT 347 | || | | || |||||||||| |||||| || ||| | | | |||| |||| Sbjct 1709 ---CTTTTGGTCTTGGTCTAATAAATGCACCCCACCTTGCGATG--GAGCTTTTCGGCAT 1763 Query 348 GTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATA 407 |||||||||||||||||||||| |||||||||||| | | | ||| |||| | ||| Sbjct 1764 GTATTAGCTCTAGAATTACCACAGTTATCCATGTAATTGGTCAACATCCAATAGATCATA 1823 Query 408 ACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCAT 467 |||||||||||||||||||||| ||||||| || | | | ||||||||||||||| Sbjct 1824 ACTGATTTAATGAGCCATTCGCGGTTTCACCTTA-ATGCGGTATGTACTTAGACATGCAT 1882 Query 468 GGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||| Sbjct 1883 GGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 1919 >seq13467 Length=1280 Score = 385 bits (426), Expect = 1e-104 Identities = 421/558 (75%), Gaps = 60/558 (11%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 674 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 733 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 734 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 793 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| Sbjct 794 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 853 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || |||||||||||||||||||||||||| || ||||| | |||||| | | Sbjct 854 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCAC 913 Query 242 -AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA-------GGAGCC------ 285 ||| | |||||| | | ||||| || ||||||| || ||| Sbjct 914 GGAGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCACCCC 973 Query 286 -----------CCGAAGG----------GCGTTGGTTTTTTATCTAATAAATACA----- 319 ||| || | ||||| |||| |||| |||||| || Sbjct 974 CCCGGCCGGGGCCGGGGGGAGGCTGACCGGGTTGG-TTTTGATCTGATAAATGCACGCAT 1032 Query 320 -CCCCTTCCGAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACGG 371 |||| ||||| ||||| | |||||||||||||||||||||||||| | Sbjct 1033 CCCCCCCGCGAAG--GGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAG 1090 Query 372 TTATCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCATT 426 ||||||| |||| | || | | | |||| ||| |||||||||||||||||||||| Sbjct 1091 TTATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATT 1150 Query 427 CGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAA 486 ||||||||||||||| | | |||||||||||||||||||||||||||||||||| Sbjct 1151 CGCAGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGACAA 1210 Query 487 GCATATGACTACTGGCAG 504 ||||||| |||||||||| Sbjct 1211 GCATATG-CTACTGGCAG 1227 >seq6793 Length=232 Score = 75.2 bits (82), Expect = 3e-11 Identities = 41/41 (100%), Gaps = 0/41 (0%) Strand=Plus/Plus Query 464 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 41 >seq4784 Length=271 Score = 75.2 bits (82), Expect = 3e-11 Identities = 41/41 (100%), Gaps = 0/41 (0%) Strand=Plus/Minus Query 464 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||| Sbjct 271 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510115138560