Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq4298 255 5e-63 seq10223 178 1e-39 >seq4298 Length=5336 Score = 255 bits (282), Expect = 5e-63 Identities = 614/915 (67%), Gaps = 17/915 (2%) Strand=Plus/Plus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 ||||||| | | | ||| ||||| ||| || || ||||| || || | || | | Sbjct 1380 ATGAACCATTGCTACGAGAAAATCCGAATCGATTTGTTTTGTTTCCAATTCAATACAAAG 1439 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATT 61144 |||| ||| |||||||| || ||||| || || || ||||| || || || ||||||| Sbjct 1440 ATATCTGGGAGATGTACAAGAAAGCGGAGGCATCGTTTTGGACAGTCGAAGAAGTCGATT 1499 Query 61145 T--GTCCAAAGACATGAATGACTGGGAG-CGTTTATCGAGCGGTGAACAACATTTCATTA 61201 | ||| || | || | ||| | |||| | || |||| |||||||||| Sbjct 1500 TAAGTCGC--GATCTAGATCATTGGAACTCGTTGAATAAGAA-TGAAAAACATTTCATCT 1556 Query 61202 AACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAAC 61261 |||||||| || |||||||| || || || || || ||||||||| || || | Sbjct 1557 CTCATGTGTTAGCATTCTTTGCTGCAAGTGATGGAATAGTTAATGAGAATCTAGCTGAGC 1616 Query 61262 GTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 ||||| | || || || | | ||||| || ||||| || || || ||||| |||| Sbjct 1617 GTTTCATTCGTGATGTTCAGATACCAGAGGCTCGATGTTTTTATGGATTTCAGATCGCCA 1676 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381 | || ||| | ||||| || ||||| | |||||| |||| || || | || Sbjct 1677 TCGAAAATATTCACTCTGAAATGTATTCGTTGCTCATCAATACCTATATAAAAGATAAAT 1736 Query 61382 CGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGG 61441 || | || | ||||||||||| | || | || || || ||||||| Sbjct 1737 ATGAGAGAGATTTTCTTTTCAATGCCATTCAAACATTGCCTTGTGTCGAGAAGAAAGCGA 1796 Query 61442 ATTGGGCCTTCAATTGGATCACCAGTACAACG-GCTACATTTGGTGAACGATTGCTGGCA 61500 | ||||| ||| |||| | | || | | | || |||| |||||| | | || Sbjct 1797 AATGGGCTATCAGATGGA-CTCAAGATGATAGAGTTAGCTTTGCTGAACGTCTTGTTGCG 1855 Query 61501 TTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAG 61560 || || | ||||| || | |||||| ||| |||||||| || ||||||||| | || Sbjct 1856 TTCGCTGCCGTCGAAGGAATCTTTTTCTCTGGCTCGTTTGCGGCTATCTTTTGGCTTAAA 1915 Query 61561 AAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGC 61620 ||||| ||||| ||||| || |||| ||||| ||||| ||||| || || || || || Sbjct 1916 AAACGAGGACTGATGCCTGGCTTGACTTTCAGTAATGAATTGATCTCGCGTGATGAAGGA 1975 Query 61621 ATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCC--GTCGG 61678 | ||||||||||||||| |||||| ||| || | ||| || ||||| || |||| Sbjct 1976 CTTCATTGTGATTTTGCTTGTTTGCTTTTCCGACAC-ATC--GTCAATCGACCTTCTCGG 2032 Query 61679 AGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTG 61738 || | | | ||||||| | ||||| || || || |||||| |||| | Sbjct 2033 GTGAAGATCTTG--AAGATTGTCACCAAAGCGGTCGAGATTGAGCAAGAATTTTTGACCG 2090 Query 61739 ACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAAT 61798 |||| ||||| ||||| | ||||| || ||| | | ||| |||| || |||| Sbjct 2091 ACGCCTTGCCTGTCTCCTTGATCGGAATCAATAGCACTTTGATGAGTGAGTACATCGAAT 2150 Query 61799 TTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGA-TCTATAATACGAAAAAC 61857 || || ||| |||||||||| ||| | | || | | || ||||| ||||| Sbjct 2151 ACTGCGCTGATCGTTTGTTGGTCGAGCTGGATGT-TGGCAAATTTTACAATACAAAAAAT 2209 Query 61858 CCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGT 61917 ||||| ||||||||| ||| || |||| || || || ||||||||||| |||||| Sbjct 2210 CCATTCTCTTTCATGGAACAGATCTCTTTGGAGGGTAAAACTAATTTTTTCGAAAAACGT 2269 Query 61918 GTAGGCGACTATCAA 61932 || | || |||||| Sbjct 2270 GTTGCAGAATATCAA 2284 >seq10223 Length=44262 Score = 178 bits (196), Expect = 1e-39 Identities = 436/657 (66%), Gaps = 8/657 (1%) Strand=Plus/Plus Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052 ||||| || || | |||| || || || || || |||||||| ||||| || | | | Sbjct 20836 ACAAATTTTGGTAACGCAACCGAAGCTAGATTACAAACAGCTATTTCGTCTGGCGATGAA 20895 Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112 || || ||||| |||||||| |||||| ||| |||||||| | ||| | ||||||| Sbjct 20896 TATTCAACAATCTCGGTGCAAAGATTAGAGCATTTGATGGTGCCAAGATTTTTTTGATTA 20955 Query 66113 CTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGAC 66172 || | ||| || ||| ||||| | |||| | || || ||||| || || || | Sbjct 20956 GATTTTCTATTACAATGATCTTTGTAGACCATGAATGGTGTTCCGGTTTCCACCTGAGCA 21015 Query 66173 TCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCG---TACG-TACCGCCCTACCTTT 66228 || | || ||| |||||| | || || | | || || || | |||| Sbjct 21016 TCGACTATTGCGAACCAAAGTTCACGAGCTGGAATTTGTTTGCGATATCGAT-TCTCTTT 21074 Query 66229 GCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGG 66288 || || | || ||||| |||||| ||| ||||| || || || | || Sbjct 21075 C---TCATATTTCTCATAGAGAGCTTCGAATTCTTCGCCCCAAACATCTTGCAATCCAGG 21131 Query 66289 ACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAG 66348 ||| | | || ||||||| ||||||| | ||||| ||| ||| ||| || | Sbjct 21132 ACATTCTTTGGGGCACATCAACGACCAAACCCCATCGGTTTCGCAACGTTTCATGAACAA 21191 Query 66349 ATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATT 66408 ||| |||||||| | || ||||| ||||| | || ||| || || ||| ||| Sbjct 21192 ATCCGGTATCCATAATGCATAGAAAAGATCTCTGGCACGTAATTCTTCTGAGCCAGTATT 21251 Query 66409 TTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAA 66468 | ||| | | || || || || || |||||||| ||||||| || || ||||| Sbjct 21252 TCGTTTCAAATTTAAAAAGTCGAAAATATCTGCATGCCACGGTTCCAAATATATTGCGAA 21311 Query 66469 CGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACG 66528 | || ||| || |||||||| ||||| || |||||| || |||| | || || Sbjct 21312 AGCACCAGGACGCTTATTACCACCTTGATCGACATAACGAGCGGTATCGTTGTAAACTCG 21371 Query 66529 CAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGC 66588 ||||||||| || | || || || | || |||||||| | ||| ||||| ||| Sbjct 21372 CAACATCGGAACCAAACCATTTGAATGACCTTTGGTGCCAACTATGTACGATCCATTTGC 21431 Query 66589 CCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA 66645 || ||| |||||||| ||||| || |||||||| | |||||| || |||||| Sbjct 21432 TCGAATACAATGAACATTAAGACCGATGCCACCGGCTGACTTCGATATAATAGCACA 21488 Score = 113 bits (124), Expect = 4e-20 Identities = 168/230 (73%), Gaps = 10/230 (4%) Strand=Plus/Plus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || ||||| || || ||||| || || | | || | ||||| ||||| || || Sbjct 19865 ATCCACAGTGAATTGAATGGCATTGGCCGCTGGTCTAGTACGTAGATAATACATTCCCGT 19924 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTG--CATAATTCGGC 65194 || | ||| ||||| ||||||||||||||||| | |||||| ||| | | | | Sbjct 19925 TTTCAAACCATTTCGCCAGCAATAGAAATGCATCGATG-TCATTTTGGCCAT-AGTAGCC 19982 Query 65195 TCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACG-ACCACGATCTGCAGC 65253 || || | ||| |||||||| || ||||| ||||||||| |||| |||||||||| |||| Sbjct 19983 TCAGCGATATGAATATTCAAAGATTGACTTTGATCGATG-AACGCACCACGATCTACAGC 20041 Query 65254 CATGTCAATGATACGACGTCCCGA--TATCTCCCAGACGGTCTTGTACAG 65301 ||| ||| || | | | || |||||||| ||||||||||| || Sbjct 20042 CATCTCACAAATTC--TTTTCTGAGGGATCTCCCAAACGGTCTTGTAGAG 20089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397476616510400