Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq4298 255 5e-63
seq10223 178 1e-39
>seq4298
Length=5336
Score = 255 bits (282), Expect = 5e-63
Identities = 614/915 (67%), Gaps = 17/915 (2%)
Strand=Plus/Plus
Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084
||||||| | | | ||| ||||| ||| || || ||||| || || | || | |
Sbjct 1380 ATGAACCATTGCTACGAGAAAATCCGAATCGATTTGTTTTGTTTCCAATTCAATACAAAG 1439
Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATT 61144
|||| ||| |||||||| || ||||| || || || ||||| || || || |||||||
Sbjct 1440 ATATCTGGGAGATGTACAAGAAAGCGGAGGCATCGTTTTGGACAGTCGAAGAAGTCGATT 1499
Query 61145 T--GTCCAAAGACATGAATGACTGGGAG-CGTTTATCGAGCGGTGAACAACATTTCATTA 61201
| ||| || | || | ||| | |||| | || |||| ||||||||||
Sbjct 1500 TAAGTCGC--GATCTAGATCATTGGAACTCGTTGAATAAGAA-TGAAAAACATTTCATCT 1556
Query 61202 AACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAAC 61261
|||||||| || |||||||| || || || || || ||||||||| || || |
Sbjct 1557 CTCATGTGTTAGCATTCTTTGCTGCAAGTGATGGAATAGTTAATGAGAATCTAGCTGAGC 1616
Query 61262 GTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321
||||| | || || || | | ||||| || ||||| || || || ||||| ||||
Sbjct 1617 GTTTCATTCGTGATGTTCAGATACCAGAGGCTCGATGTTTTTATGGATTTCAGATCGCCA 1676
Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381
| || ||| | ||||| || ||||| | |||||| |||| || || | ||
Sbjct 1677 TCGAAAATATTCACTCTGAAATGTATTCGTTGCTCATCAATACCTATATAAAAGATAAAT 1736
Query 61382 CGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGG 61441
|| | || | ||||||||||| | || | || || || |||||||
Sbjct 1737 ATGAGAGAGATTTTCTTTTCAATGCCATTCAAACATTGCCTTGTGTCGAGAAGAAAGCGA 1796
Query 61442 ATTGGGCCTTCAATTGGATCACCAGTACAACG-GCTACATTTGGTGAACGATTGCTGGCA 61500
| ||||| ||| |||| | | || | | | || |||| |||||| | | ||
Sbjct 1797 AATGGGCTATCAGATGGA-CTCAAGATGATAGAGTTAGCTTTGCTGAACGTCTTGTTGCG 1855
Query 61501 TTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAG 61560
|| || | ||||| || | |||||| ||| |||||||| || ||||||||| | ||
Sbjct 1856 TTCGCTGCCGTCGAAGGAATCTTTTTCTCTGGCTCGTTTGCGGCTATCTTTTGGCTTAAA 1915
Query 61561 AAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGC 61620
||||| ||||| ||||| || |||| ||||| ||||| ||||| || || || || ||
Sbjct 1916 AAACGAGGACTGATGCCTGGCTTGACTTTCAGTAATGAATTGATCTCGCGTGATGAAGGA 1975
Query 61621 ATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCC--GTCGG 61678
| ||||||||||||||| |||||| ||| || | ||| || ||||| || ||||
Sbjct 1976 CTTCATTGTGATTTTGCTTGTTTGCTTTTCCGACAC-ATC--GTCAATCGACCTTCTCGG 2032
Query 61679 AGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTG 61738
|| | | | ||||||| | ||||| || || || |||||| |||| |
Sbjct 2033 GTGAAGATCTTG--AAGATTGTCACCAAAGCGGTCGAGATTGAGCAAGAATTTTTGACCG 2090
Query 61739 ACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAAT 61798
|||| ||||| ||||| | ||||| || ||| | | ||| |||| || ||||
Sbjct 2091 ACGCCTTGCCTGTCTCCTTGATCGGAATCAATAGCACTTTGATGAGTGAGTACATCGAAT 2150
Query 61799 TTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGA-TCTATAATACGAAAAAC 61857
|| || ||| |||||||||| ||| | | || | | || ||||| |||||
Sbjct 2151 ACTGCGCTGATCGTTTGTTGGTCGAGCTGGATGT-TGGCAAATTTTACAATACAAAAAAT 2209
Query 61858 CCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGT 61917
||||| ||||||||| ||| || |||| || || || ||||||||||| ||||||
Sbjct 2210 CCATTCTCTTTCATGGAACAGATCTCTTTGGAGGGTAAAACTAATTTTTTCGAAAAACGT 2269
Query 61918 GTAGGCGACTATCAA 61932
|| | || ||||||
Sbjct 2270 GTTGCAGAATATCAA 2284
>seq10223
Length=44262
Score = 178 bits (196), Expect = 1e-39
Identities = 436/657 (66%), Gaps = 8/657 (1%)
Strand=Plus/Plus
Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052
||||| || || | |||| || || || || || |||||||| ||||| || | | |
Sbjct 20836 ACAAATTTTGGTAACGCAACCGAAGCTAGATTACAAACAGCTATTTCGTCTGGCGATGAA 20895
Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112
|| || ||||| |||||||| |||||| ||| |||||||| | ||| | |||||||
Sbjct 20896 TATTCAACAATCTCGGTGCAAAGATTAGAGCATTTGATGGTGCCAAGATTTTTTTGATTA 20955
Query 66113 CTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGAC 66172
|| | ||| || ||| ||||| | |||| | || || ||||| || || || |
Sbjct 20956 GATTTTCTATTACAATGATCTTTGTAGACCATGAATGGTGTTCCGGTTTCCACCTGAGCA 21015
Query 66173 TCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCG---TACG-TACCGCCCTACCTTT 66228
|| | || ||| |||||| | || || | | || || || | ||||
Sbjct 21016 TCGACTATTGCGAACCAAAGTTCACGAGCTGGAATTTGTTTGCGATATCGAT-TCTCTTT 21074
Query 66229 GCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGG 66288
|| || | || ||||| |||||| ||| ||||| || || || | ||
Sbjct 21075 C---TCATATTTCTCATAGAGAGCTTCGAATTCTTCGCCCCAAACATCTTGCAATCCAGG 21131
Query 66289 ACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAG 66348
||| | | || ||||||| ||||||| | ||||| ||| ||| ||| || |
Sbjct 21132 ACATTCTTTGGGGCACATCAACGACCAAACCCCATCGGTTTCGCAACGTTTCATGAACAA 21191
Query 66349 ATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATT 66408
||| |||||||| | || ||||| ||||| | || ||| || || ||| |||
Sbjct 21192 ATCCGGTATCCATAATGCATAGAAAAGATCTCTGGCACGTAATTCTTCTGAGCCAGTATT 21251
Query 66409 TTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAA 66468
| ||| | | || || || || || |||||||| ||||||| || || |||||
Sbjct 21252 TCGTTTCAAATTTAAAAAGTCGAAAATATCTGCATGCCACGGTTCCAAATATATTGCGAA 21311
Query 66469 CGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACG 66528
| || ||| || |||||||| ||||| || |||||| || |||| | || ||
Sbjct 21312 AGCACCAGGACGCTTATTACCACCTTGATCGACATAACGAGCGGTATCGTTGTAAACTCG 21371
Query 66529 CAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGC 66588
||||||||| || | || || || | || |||||||| | ||| ||||| |||
Sbjct 21372 CAACATCGGAACCAAACCATTTGAATGACCTTTGGTGCCAACTATGTACGATCCATTTGC 21431
Query 66589 CCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA 66645
|| ||| |||||||| ||||| || |||||||| | |||||| || ||||||
Sbjct 21432 TCGAATACAATGAACATTAAGACCGATGCCACCGGCTGACTTCGATATAATAGCACA 21488
Score = 113 bits (124), Expect = 4e-20
Identities = 168/230 (73%), Gaps = 10/230 (4%)
Strand=Plus/Plus
Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136
||| || ||||| || || ||||| || || | | || | ||||| ||||| || ||
Sbjct 19865 ATCCACAGTGAATTGAATGGCATTGGCCGCTGGTCTAGTACGTAGATAATACATTCCCGT 19924
Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTG--CATAATTCGGC 65194
|| | ||| ||||| ||||||||||||||||| | |||||| ||| | | | |
Sbjct 19925 TTTCAAACCATTTCGCCAGCAATAGAAATGCATCGATG-TCATTTTGGCCAT-AGTAGCC 19982
Query 65195 TCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACG-ACCACGATCTGCAGC 65253
|| || | ||| |||||||| || ||||| ||||||||| |||| |||||||||| ||||
Sbjct 19983 TCAGCGATATGAATATTCAAAGATTGACTTTGATCGATG-AACGCACCACGATCTACAGC 20041
Query 65254 CATGTCAATGATACGACGTCCCGA--TATCTCCCAGACGGTCTTGTACAG 65301
||| ||| || | | | || |||||||| ||||||||||| ||
Sbjct 20042 CATCTCACAAATTC--TTTTCTGAGGGATCTCCCAAACGGTCTTGTAGAG 20089
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397476616510400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |