Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_031927.1
Length=216121
Score E
Sequences producing significant alignments: (Bits) Value
seq8921 95.1 2e-14
>seq8921
Length=5376
Score = 95.1 bits (104), Expect = 2e-14
Identities = 224/333 (67%), Gaps = 14/333 (4%)
Strand=Plus/Minus
Query 162511 GAAACCACTCCAATGTATCCACGATCCCCTTATGGAGTTGCTAAACTATATGGGTTCTGG 162570
||||| |||||| | ||||||||||| |||||||| || | || |||| | | || |
Sbjct 3674 GAAACGACTCCATTTTATCCACGATCTCCTTATGGCGTATCGAAGCTATTCGCCTACTCG 3615
Query 162571 ATCATCAAAAACTACAGGGAAAGCTATGACATACATGCCTCTAGCGGTATTCTATTCAAT 162630
||| | || || | ||| || || || || | || ||||| ||||||
Sbjct 3614 ATCGTTGTTAATTATCGAGAAGCTTACGATATGTTCGCTGTCAATGGGATTCTTTTCAAT 3555
Query 162631 CACGAAAGCTCAC---GCAGAGGAGAGACGTTCGTCACACGCAAGATCGTCCGAGCCTTG 162687
|| ||| |||| | ||||| || ||||| || ||| | || ||| |||| ||
Sbjct 3554 CATGAA---TCACCGAGAAGAGGTGAAACGTTTGTGACAAGAAAAATCACTCGAGG--TG 3500
Query 162688 TCCCGAA--TTAGTGTGGG--ACTCCAAAGTGATCTACAACTTGGAAACCTCAATGCCCG 162743
| |||| || | | || | | || || | | ||||| || || || ||
Sbjct 3499 TTGCGAAAATTCATCTAGGTGAATTAGAAT--ATATTGAGCTTGGTAATCTTGATTCCAA 3442
Query 162744 ACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGGTTGATGCTTCAGCAAGA 162803
||| || ||||| ||||| ||||| ||||| || || |||||||||||| | || |||||
Sbjct 3441 ACGGGATTGGGGCCACGCAAAAGATTACGTTGAAGCAATGTGGTTGATGATGCAACAAGA 3382
Query 162804 GAAGCCAGATGATTATGTGATCGCAACTGGTGA 162836
| ||||| |||| ||| || ||||| |||||
Sbjct 3381 TCAACCAGAAGATTTTGTCATTGCAACCGGTGA 3349
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 691296188493600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |