Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq8921 95.1 2e-14 >seq8921 Length=5376 Score = 95.1 bits (104), Expect = 2e-14 Identities = 224/333 (67%), Gaps = 14/333 (4%) Strand=Plus/Minus Query 162511 GAAACCACTCCAATGTATCCACGATCCCCTTATGGAGTTGCTAAACTATATGGGTTCTGG 162570 ||||| |||||| | ||||||||||| |||||||| || | || |||| | | || | Sbjct 3674 GAAACGACTCCATTTTATCCACGATCTCCTTATGGCGTATCGAAGCTATTCGCCTACTCG 3615 Query 162571 ATCATCAAAAACTACAGGGAAAGCTATGACATACATGCCTCTAGCGGTATTCTATTCAAT 162630 ||| | || || | ||| || || || || | || ||||| |||||| Sbjct 3614 ATCGTTGTTAATTATCGAGAAGCTTACGATATGTTCGCTGTCAATGGGATTCTTTTCAAT 3555 Query 162631 CACGAAAGCTCAC---GCAGAGGAGAGACGTTCGTCACACGCAAGATCGTCCGAGCCTTG 162687 || ||| |||| | ||||| || ||||| || ||| | || ||| |||| || Sbjct 3554 CATGAA---TCACCGAGAAGAGGTGAAACGTTTGTGACAAGAAAAATCACTCGAGG--TG 3500 Query 162688 TCCCGAA--TTAGTGTGGG--ACTCCAAAGTGATCTACAACTTGGAAACCTCAATGCCCG 162743 | |||| || | | || | | || || | | ||||| || || || || Sbjct 3499 TTGCGAAAATTCATCTAGGTGAATTAGAAT--ATATTGAGCTTGGTAATCTTGATTCCAA 3442 Query 162744 ACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGGTTGATGCTTCAGCAAGA 162803 ||| || ||||| ||||| ||||| ||||| || || |||||||||||| | || ||||| Sbjct 3441 ACGGGATTGGGGCCACGCAAAAGATTACGTTGAAGCAATGTGGTTGATGATGCAACAAGA 3382 Query 162804 GAAGCCAGATGATTATGTGATCGCAACTGGTGA 162836 | ||||| |||| ||| || ||||| ||||| Sbjct 3381 TCAACCAGAAGATTTTGTCATTGCAACCGGTGA 3349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691296188493600