Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq5005 114 1e-23 seq67301 113 5e-23 seq15285 104 2e-20 seq64617 87.8 2e-15 >seq5005 Length=26319 Score = 114 bits (126), Expect = 1e-23 Identities = 140/185 (76%), Gaps = 12/185 (6%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC---CTTTGCTCGAATACATTAC 66 || ||||||||||| ||||||||| | | ||||||||| | | || |||||| | | Sbjct 16338 ACGTTTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTATCCTCGCCTGAATAC--TGC 16281 Query 67 ---CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCC-- 121 ||||||||||| ||||||||| | |||||||||||||| ||||| | ||| | || Sbjct 16280 GTGCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACCCCGA 16223 Query 122 CGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCT 181 |||||||| |||| ||| || ||||| | ||||| || | |||||||||||| Sbjct 16222 GGTAATGATTAATAGGGACAGATGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCT 16163 Query 182 TGGAT 186 ||||| Sbjct 16162 TGGAT 16158 >seq67301 Length=807 Score = 113 bits (124), Expect = 5e-23 Identities = 145/193 (75%), Gaps = 14/193 (7%) Strand=Plus/Minus Query 4 ACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC----GAAT 59 ||||| || ||||||||||| ||||||||| | | |||||||| || | ||| |||| Sbjct 629 ACCAGTACGTTTACTTTGAACAAATTAGAGTGCTTAAAGCAGG-CTATCCTCACCTGAAT 571 Query 60 ACATTAC---CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGA 116 || | | ||||||||||| |||||||| | |||||||||||||| ||||| | ||| Sbjct 570 AC--TGCGTGCATGGAATAATGCAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGA 515 Query 117 CCGCC--CGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTG 174 | || |||||||| |||| ||| || |||| | ||||| || | ||||| Sbjct 514 ACCCCGAGGTAATGATTAATAGGGACAGATAGGGGCATTCGTATTGCGACGTTAGAGGTG 455 Query 175 AAATTCTTGGATT 187 ||||||||||||| Sbjct 454 AAATTCTTGGATT 442 >seq15285 Length=534 Score = 104 bits (114), Expect = 2e-20 Identities = 136/183 (74%), Gaps = 8/183 (4%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC---CTTTGCTCGAATACAT-TA 65 || ||||||||||| ||||||||| | | ||||||||| | | || |||||| | Sbjct 116 ACGTTTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTATCCTCGCCTGAATACTTCGT 175 Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCC--CG 123 |||||| |||| ||||||||| | |||||||||||||| ||||| | ||| | || | Sbjct 176 GCATGGAGTAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACCCCGAGG 233 Query 124 TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTG 183 ||||||| |||| ||| || | ||| | ||||| || | | |||||||||||| Sbjct 234 TAATGATTAATAGGGACAGATGTGGGCATTCGTATTGCGACGTTAGATGTGAAATTCTTG 293 Query 184 GAT 186 ||| Sbjct 294 GAT 296 >seq64617 Length=1007 Score = 87.8 bits (96), Expect = 2e-15 Identities = 135/186 (73%), Gaps = 14/186 (8%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC----GAATACATTA 65 || ||||| |||| ||||||||| | ||||||||| || ||| |||||| | Sbjct 374 ACGTTTACATTGACCAAATTAGAGTTCTTAAAGCAGGCTATT-CTCACCTGAATAC--TG 430 Query 66 C---CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCC 122 | ||||||||||| |||||||| | |||||||||||||| ||||| | ||| | || Sbjct 431 CGTGCATGGAATAATGCAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACCCCG 488 Query 123 --GTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||| |||| ||| || | || | ||||| || | ||||||||||| Sbjct 489 AGGTAATGATTAATAGGGACAGATAGAGGCATTCGTATTGCGAAGTTAGAGGTGAAATTC 548 Query 181 TTGGAT 186 |||||| Sbjct 549 TTGGAT 554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511655225440