Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1810 100 1e-18 >seq1810 Length=135711 Score = 100 bits (110), Expect = 1e-18 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615 |||||| || || |||||||||||||||||||||| | |||| ||| |||| | | || Sbjct 49501 AGCATATATGCTGTGACCCGAAAGATGGTGAACTATACATGAACAGGTGGAAGTCGGGGG 49442 Query 616 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675 |||| ||| |||| | || | | |||||| | |||||||| |||| | ||| |||| Sbjct 49441 AAACCCTGCTGGAAGACCGAAACAGTTCTGATGACCAAATCGAGTGTCAGAATTGAGTAT 49382 Query 676 AGGGGCGA 683 |||||||| Sbjct 49381 AGGGGCGA 49374 Score = 89.7 bits (98), Expect = 2e-15 Identities = 117/160 (73%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| | | |||| ||| ||| |||||| | | |||||| |||||| Sbjct 50805 GAGTCGTGTTGCTTGATAGTTCAGCACTAGGTGGTTGGTAAACTCCATCTAAAACTAAAT 50746 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || ||||||||||| ||||||| |||| ||||| ||||||| ||| || | Sbjct 50745 ATAACAATGAGACCGATAGTTAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTCTGAAT 50686 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGG-AAGC 198 |||||| || || |||||||| || | | |||| |||| Sbjct 50685 AGAGAG---AAGAGTACGTGAAACTGCTTAGAGGGTAAGC 50649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079741699100