Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq231 138 4e-30 seq31 109 2e-21 >seq231 Length=859231 Score = 138 bits (152), Expect = 4e-30 Identities = 159/214 (74%), Gaps = 14/214 (7%) Strand=Plus/Plus Query 172 GTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG---- 227 ||||||| | | | ||| ||| |||| ||||| |||||||||||||| | | Sbjct 655025 GTTCCGCATTGTCAAGTAAATAAGGAAACAATAAGAGTAGTGGTATTTCATTATCAATAA 655084 Query 228 ----CCGAA-----ACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCG 278 ||||| | |||||||| ||||||||||||| | || | ||| | | Sbjct 655085 AGGCCCGAAGGCCAATATCTCCCACTCATTCTACACCTCTTATATCTCCTTACACTGCCA 655144 Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 || ||||||||||||||||||||||| ||||||| ||| ||| |||| |||||||||| Sbjct 655145 GATTAGAGTCAAGCTCAACAGGGTCT-CTTTCCCTGCTAATTATTCCAAACCCGTTCCCT 655203 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACA 372 ||||| |||| ||| ||||||||||||| ||||| Sbjct 655204 TGGCTTTGGTATCGTTAGATAGTAGATAAGGACA 655237 >seq31 Length=1843252 Score = 109 bits (120), Expect = 2e-21 Identities = 77/87 (89%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 448 AGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACA-TTCAGAGCA 506 ||||||||||||||||||| || | | ||||||||||||||||||||| || |||||| Sbjct 969851 AGTTACTCCCGCCGTTTACTTGCACATACTTGAATTTCTTCACTTTGACATTTTAGAGCA 969792 Query 507 CTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||| ||||||| Sbjct 969791 GTGGGCAGAAATCACATTGTGTCAACA 969765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635003089216