Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq1090 558 3e-154
seq305 381 5e-101
>seq1090
Length=275775
Score = 558 bits (618), Expect = 3e-154
Identities = 1250/1862 (67%), Gaps = 49/1862 (3%)
Strand=Plus/Minus
Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136
||| || ||||| || || ||||| ||||| | || || || | ||| |||||||| ||
Sbjct 261583 ATCAACAGTGAATTGTATAGCATTGGCAGCTGGTTTAGTTCTCAAATAATACATGCCCGT 261524
Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196
||| |||||||| ||| | ||||||||| || || | ||||| | || || |||||
Sbjct 261523 CTTAAGGCCAGCTTTCCAGGAATAGAAATGTATTGAAGTCAATTTGCCGTAGTTGGGCTC 261464
Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256
||||||||| ||||| || || ||||| || || ||| || |||||||| ||||||||
Sbjct 261463 GGCCACATGTATATTGAAGGATTGACTTTGGTCAATGAAAGCTCCACGATCAGCAGCCAT 261404
Query 65257 GTCAATGATACGACGTCCC-GATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAA 65315
| |||| | | | | | || || ||||| || || ||||| || |||| ||
Sbjct 261403 TTTAATGGTG-GTCTTGACAGAAATTTCCCATACCGTTTTGTAGAGCTCTCGTATTTCTT 261345
Query 65316 TTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCG 65375
| ||||| ||||| |||| || | || ||||| | | |||||| ||| |||
Sbjct 261344 TGGGAATTTCCTCGATGTTTTGTATGGAGCCACGGCTAGAAATAATTTTATTTTTCATTT 261285
Query 65376 ACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGA 65435
||| ||| | | | ||| | | || || || ||| ||| |||||| | | ||
Sbjct 261284 CCTCATCCCATAGGTCGAGTTCGGTCAAATCTTTAAGCAAATGATGATTGACAATGTTGA 261225
Query 65436 ACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAG 65495
| || || || |||||||| || ||| ||||| || ||| ||||| || | ||||
Sbjct 261224 ATTCACCCGATAGTACACGGCGTGTATAAATGTTTGAAGTGTACGGTTCGAAAGCTTCAT 261165
Query 65496 TGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTC 65555
||||||| | |||||||||||| || || || |||||||| || | | || || || |
Sbjct 261164 TGTTGCCCATAATTTGGGCAGTCGAAGCCGTGGGCATGGGGGCCAGGAGCAGCGAATTGC 261105
Query 65556 GCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTATCG- 65614
| | || | | |||| | | | | |||| | ||| | ||||
Sbjct 261104 GTACACCATGTTTGGCAATTCTTTCCTTTAGGGCAGCCCAATCCCAGAG------ATCGG 261051
Query 65615 TCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAGG 65674
| | || || | |||||| || | ||| || | || | || | || || ||
Sbjct 261050 TGGGCA-CCTTGTTCCACATGTCATATTGAAGTATACCTTTGCTCACTGGGCTTCCT-GG 260993
Query 65675 AAAC-TATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAA 65733
| || | || || || || | | || | || ||| || | || | || || |
Sbjct 260992 ATACGTTTCATAGGGACCATCTTGTTCAGCCAATTCACAACTTGCTTCCAAAGCACCATA 260933
Query 65734 ATAAATGGTCTCGAAAATGCGTCGATT-AAGTTCACGTGCCTCATCGCTCTCGTACGGCA 65792
||||| || || || || || |||| || || | | ||||| ||||| ||||| ||
Sbjct 260932 GTAAATAGTTTCAAATATTTGTTGATTCAATTTGAAG-GCCTCCTCGCTTTCGTAGGGAT 260874
Query 65793 TACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGAC 65852
|| ||| || | | ||| ||||| | ||| || || ||||| || ||||||||||| |
Sbjct 260873 AACGCATGAGAATTAGAGTATCGGCAAAACCCTGGACACCAATGCCAATGGGACGATGTC 260814
Query 65853 GCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCA 65912
| ||| || ||| ||||| | | || ||||| |||| ||| || || || |
Sbjct 260813 TGAGATTAGATTTTCTGGCCTCCTGCAGTGGATAGTAGTTGACATCTATGATTTTGTTGA 260754
Query 65913 AATTGCGTGTCACCACATGCACGATAC-GTCG-CAATTGTTCGAAATCAAAATGTTTAGG 65970
|||||| | ||| || | ||||| ||| ||||| | || |||||| |||
Sbjct 260753 GATTGCGCGCCACGACTTTA--GATACTGTCTTCAATTTCTTAAAGTCAAAAGTTTTT-- 260698
Query 65971 ACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGAC 66030
||||| || ||||||| || ||| || || || | |||||||||
Sbjct 260697 ----TCGGGCGT---------CACAAACATGTTCAGGCAAATGGAGGCCAAGTTGCAGAC 260651
Query 66031 AGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTAT 66090
||| || || || || || | ||| || || ||||| ||||||| ||| ||||| ||
Sbjct 260650 AGCGATTTCATCCGGTGCTGAATATTCAACGATTTCTGTGCACAAATTGCTGCATTTAAT 260591
Query 66091 GGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGG 66150
|||||| | ||| ||||||||||| |||||||| || | ||||| | | |||||| ||
Sbjct 260590 GGTGCCAACATTTTGTTGATTACTTTTGCGATTACAAGAGTCCTTAAATAGCATGTAGGG 260531
Query 66151 AGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGT 66210
||| || || || |||||||| || || ||||| |||||| || | ||||| | ||
Sbjct 260530 AGTTCCAGTTTCTACTTGGGATTCTATAATGGCAAACCAAAGCGCCTGCGCCTTAATGGT 260471
Query 66211 AC-GTACCGCCCTACCTTTGCG------TTCGTAATGTTCGTAGAGGTGTTCGAAGGATT 66263
| || || |||||| |||||| | |||||| || | || || ||
Sbjct 260470 TCTGT-------TAGCTTTGCCGGCCTTTTCGTATTTTTCGTAAAGCTTGTCAAATTCTT 260418
Query 66264 CACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCAT 66323
||||||| || || || | |||||| ||||| |||||||| || |||||||| || |
Sbjct 260417 CACCCCAGACCTCATGGAGTCCTGGACATTTGTGAGGACACATTAGGGACCAATCGCCGT 260358
Query 66324 CCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTG 66383
| ||| ||||| |||||||| | ||| |||||||| || || ||||| ||||| | |
Sbjct 260357 TTTCTTCCACACGTCGCATAAACAAATCTGGTATCCAAAGAGCATAGAAAAGATCTCTGG 260298
Query 66384 CTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCAT 66443
| || ||||| || ||||| ||| || || || | |||||||||||||| | ||
Sbjct 260297 CACGATGCTCTTCTTTGCCGGTATTCTTTTTTAAATCCAAAAACTCAAAGATGTCCGAAT 260238
Query 66444 GCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGT 66503
|||| ||||||| ||||||||| || | || ||||||||| ||||| || || ||||
Sbjct 260237 GCCAAGGTTCCAAGTAGATGGCAAATGCACCAGGACGTTTGCCACCACCCTGATCAACGT 260178
Query 66504 AGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGG 66563
|||| || ||||| ||||| || | ||||| || || | || || || | ||||| |
Sbjct 260177 AGCGTGCAACATTATTGAATACTCTTAACATGGGCACCAAACCATTGGAGGTTCCATTAG 260118
Query 66564 TGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGG 66623
||||| | |||| | ||| || || || || ||||| | |||||||| || |
Sbjct 260117 TGCCGGCTATGGAAGTTCCCTTAGCGCGAATGCAATGGACATTGATTCCAATACCTCCAG 260058
Query 66624 CCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCAC 66683
| | || || || |||||| | |||| | | || ||||| ||||| || ||
Sbjct 260057 CTGATTTGGAAATCATAGCACACTGCTCCACAGACTTAAAAATGCCCTCAATAGAATCGG 259998
Query 66684 CCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGA 66743
| ||||||| |||| | || ||| | ||| || |||||| || | || |
Sbjct 259997 CAACCATGGTCAAGAGGAAACAAGAAGACAATTGTGGACGATTTGTGGCTGCAGCAAACA 259938
Query 66744 GGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAG 66803
||||| | || || ||||||||| | |||| | || || || || ||| | |
Sbjct 259937 ATGTGGGCGATGCATGGGTAAAGTAACGCTCGGACAACCAGTTATAAGTTTCAATGGCCG 259878
Query 66804 CATCAATGTTTTCGCCATGAATCCCGA-GTGCACATCGCATCAGGAGGTATTGAGGCCGT 66862
||| |||| || |||||||| || | | |||| |||||||| | | ||| ||||||
Sbjct 259877 AATCTATGTCCTCTCCATGAATACCTACGGCCACA-CGCATCAGCATATGTTGCGGCCGT 259819
Query 66863 TCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAG 66922
||| | | | | | || || | || || || |||||||| || ||||| | ||||||
Sbjct 259818 TCGGCAATCTTACCATTCATTTTCAATAGATATGAGCGTTCTAGAGTCTTAAATCCAAAG 259759
Query 66923 TA 66924
||
Sbjct 259758 TA 259757
>seq305
Length=710094
Score = 381 bits (422), Expect = 5e-101
Identities = 523/725 (72%), Gaps = 7/725 (1%)
Strand=Plus/Minus
Query 61106 AGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACT 61165
|||| || || || || ||||| || ||||| || ||| |||| ||||| ||| |||||
Sbjct 409082 AGGCTGAGGCATCATTTTGGACTGTTGAGGAAGTGGATCTGTCTAAAGATATGTCTGACT 409023
Query 61166 GGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCG 61225
||||| | | | |||| | |||||||| ||||||||||| |||||||| |
Sbjct 409022 GGGAGAAACTCACAGACAATGAAAGATATTTCATTTCCCATGTGTTGGCTTTCTTTGCTG 408963
Query 61226 CTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGT 61285
| || || || || || ||||||||| | | || | || | || |||||||||||
Sbjct 408962 CCTCCGATGGCATAGTTAATGAGAATCTTGTCGAGAGATTTTCTCAAGAGGTGCAAGTAA 408903
Query 61286 CGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGT 61345
| || || || || ||||| |||||||||||||| ||||||||||| |||||||| ||||
Sbjct 408902 CTGAAGCCCGCTGCTTCTATGGCTTCCAGATTGCTATGGAGAATGTTCACTCGGAAATGT 408843
Query 61346 ACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATG 61405
|||| |||| || || || || || | || || | |||||||| || |||||||
Sbjct 408842 ACAGCATTCTTATTGACACCTATATTAAAGATCGTGACCAACGTGAATATTTATTCAATG 408783
Query 61406 CCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCA 61465
|||| || || || || || || || | ||||| |||||||| || ||||| | ||
Sbjct 408782 CCATTGAAACTATGCCAGCTGTTAAAAGAAAAGCTGATTGGGCTTTGTCATGGAT-ATCA 408724
Query 61466 GTACA-ACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTT 61524
| | |||| ||||||||||| | | || ||||| | || || || ||||
Sbjct 408723 TCGGATTCTGCTAATTTTGGTGAACGTGTAATAGCTTTTGCTGCTGTTGAAGGCATATTC 408664
Query 61525 TTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTG 61584
||||| || |||||| | || || ||||||||||||||||| || |||||||| |
Sbjct 408663 TTCAGCGGCAGTTTTGCCTCCATTTTCTGGTTGAAGAAACGTGGCCTAATGCCCGGCTTA 408604
Query 61585 ACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTG 61644
|| ||| ||| ||| ||||||| || ||||| || ||||||||||||||||||| |||
Sbjct 408603 ACATTCTCCAACGAGCTGATATCGCGTGACGAAGGTTTGCATTGTGATTTTGCTGTATTG 408544
Query 61645 CTATTCAAACGCTATCTGGTG-AATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCG 61703
| || || ||||||||| | | || | || || ||| | |||||| | |
Sbjct 408543 ATGTTTAA---GTATCTGGTGCAGAAGCCCAGCAGA-GAACGTATCATTGAGATAATAAG 408488
Query 61704 TGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGG 61763
|| ||||| | |||||||||||||| || || || || ||||| | | || ||
Sbjct 408487 AGAAGCGGTTAAAATCGAACAGGAATTCCTTACAGAAGCATTGCCATGCAATTTGATTGG 408428
Query 61764 CATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGA 61823
|||||||||| ||||||| |||||||||||||||| || || |||||| | |||||
Sbjct 408427 TATGAATTGTGATTTAATGTCCGAGTATATTGAATTTGTAGCAGATCGTCTGCTAGTCGA 408368
Query 61824 TTTGG 61828
||||
Sbjct 408367 ATTGG 408363
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397509652174880
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