Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1090 558 3e-154 seq305 381 5e-101 >seq1090 Length=275775 Score = 558 bits (618), Expect = 3e-154 Identities = 1250/1862 (67%), Gaps = 49/1862 (3%) Strand=Plus/Minus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || ||||| || || ||||| ||||| | || || || | ||| |||||||| || Sbjct 261583 ATCAACAGTGAATTGTATAGCATTGGCAGCTGGTTTAGTTCTCAAATAATACATGCCCGT 261524 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196 ||| |||||||| ||| | ||||||||| || || | ||||| | || || ||||| Sbjct 261523 CTTAAGGCCAGCTTTCCAGGAATAGAAATGTATTGAAGTCAATTTGCCGTAGTTGGGCTC 261464 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 ||||||||| ||||| || || ||||| || || ||| || |||||||| |||||||| Sbjct 261463 GGCCACATGTATATTGAAGGATTGACTTTGGTCAATGAAAGCTCCACGATCAGCAGCCAT 261404 Query 65257 GTCAATGATACGACGTCCC-GATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAA 65315 | |||| | | | | | || || ||||| || || ||||| || |||| || Sbjct 261403 TTTAATGGTG-GTCTTGACAGAAATTTCCCATACCGTTTTGTAGAGCTCTCGTATTTCTT 261345 Query 65316 TTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCG 65375 | ||||| ||||| |||| || | || ||||| | | |||||| ||| ||| Sbjct 261344 TGGGAATTTCCTCGATGTTTTGTATGGAGCCACGGCTAGAAATAATTTTATTTTTCATTT 261285 Query 65376 ACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGA 65435 ||| ||| | | | ||| | | || || || ||| ||| |||||| | | || Sbjct 261284 CCTCATCCCATAGGTCGAGTTCGGTCAAATCTTTAAGCAAATGATGATTGACAATGTTGA 261225 Query 65436 ACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAG 65495 | || || || |||||||| || ||| ||||| || ||| ||||| || | |||| Sbjct 261224 ATTCACCCGATAGTACACGGCGTGTATAAATGTTTGAAGTGTACGGTTCGAAAGCTTCAT 261165 Query 65496 TGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTC 65555 ||||||| | |||||||||||| || || || |||||||| || | | || || || | Sbjct 261164 TGTTGCCCATAATTTGGGCAGTCGAAGCCGTGGGCATGGGGGCCAGGAGCAGCGAATTGC 261105 Query 65556 GCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTATCG- 65614 | | || | | |||| | | | | |||| | ||| | |||| Sbjct 261104 GTACACCATGTTTGGCAATTCTTTCCTTTAGGGCAGCCCAATCCCAGAG------ATCGG 261051 Query 65615 TCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAGG 65674 | | || || | |||||| || | ||| || | || | || | || || || Sbjct 261050 TGGGCA-CCTTGTTCCACATGTCATATTGAAGTATACCTTTGCTCACTGGGCTTCCT-GG 260993 Query 65675 AAAC-TATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAA 65733 | || | || || || || | | || | || ||| || | || | || || | Sbjct 260992 ATACGTTTCATAGGGACCATCTTGTTCAGCCAATTCACAACTTGCTTCCAAAGCACCATA 260933 Query 65734 ATAAATGGTCTCGAAAATGCGTCGATT-AAGTTCACGTGCCTCATCGCTCTCGTACGGCA 65792 ||||| || || || || || |||| || || | | ||||| ||||| ||||| || Sbjct 260932 GTAAATAGTTTCAAATATTTGTTGATTCAATTTGAAG-GCCTCCTCGCTTTCGTAGGGAT 260874 Query 65793 TACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGAC 65852 || ||| || | | ||| ||||| | ||| || || ||||| || ||||||||||| | Sbjct 260873 AACGCATGAGAATTAGAGTATCGGCAAAACCCTGGACACCAATGCCAATGGGACGATGTC 260814 Query 65853 GCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCA 65912 | ||| || ||| ||||| | | || ||||| |||| ||| || || || | Sbjct 260813 TGAGATTAGATTTTCTGGCCTCCTGCAGTGGATAGTAGTTGACATCTATGATTTTGTTGA 260754 Query 65913 AATTGCGTGTCACCACATGCACGATAC-GTCG-CAATTGTTCGAAATCAAAATGTTTAGG 65970 |||||| | ||| || | ||||| ||| ||||| | || |||||| ||| Sbjct 260753 GATTGCGCGCCACGACTTTA--GATACTGTCTTCAATTTCTTAAAGTCAAAAGTTTTT-- 260698 Query 65971 ACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGAC 66030 ||||| || ||||||| || ||| || || || | ||||||||| Sbjct 260697 ----TCGGGCGT---------CACAAACATGTTCAGGCAAATGGAGGCCAAGTTGCAGAC 260651 Query 66031 AGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTAT 66090 ||| || || || || || | ||| || || ||||| ||||||| ||| ||||| || Sbjct 260650 AGCGATTTCATCCGGTGCTGAATATTCAACGATTTCTGTGCACAAATTGCTGCATTTAAT 260591 Query 66091 GGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGG 66150 |||||| | ||| ||||||||||| |||||||| || | ||||| | | |||||| || Sbjct 260590 GGTGCCAACATTTTGTTGATTACTTTTGCGATTACAAGAGTCCTTAAATAGCATGTAGGG 260531 Query 66151 AGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGT 66210 ||| || || || |||||||| || || ||||| |||||| || | ||||| | || Sbjct 260530 AGTTCCAGTTTCTACTTGGGATTCTATAATGGCAAACCAAAGCGCCTGCGCCTTAATGGT 260471 Query 66211 AC-GTACCGCCCTACCTTTGCG------TTCGTAATGTTCGTAGAGGTGTTCGAAGGATT 66263 | || || |||||| |||||| | |||||| || | || || || Sbjct 260470 TCTGT-------TAGCTTTGCCGGCCTTTTCGTATTTTTCGTAAAGCTTGTCAAATTCTT 260418 Query 66264 CACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCAT 66323 ||||||| || || || | |||||| ||||| |||||||| || |||||||| || | Sbjct 260417 CACCCCAGACCTCATGGAGTCCTGGACATTTGTGAGGACACATTAGGGACCAATCGCCGT 260358 Query 66324 CCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTG 66383 | ||| ||||| |||||||| | ||| |||||||| || || ||||| ||||| | | Sbjct 260357 TTTCTTCCACACGTCGCATAAACAAATCTGGTATCCAAAGAGCATAGAAAAGATCTCTGG 260298 Query 66384 CTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCAT 66443 | || ||||| || ||||| ||| || || || | |||||||||||||| | || Sbjct 260297 CACGATGCTCTTCTTTGCCGGTATTCTTTTTTAAATCCAAAAACTCAAAGATGTCCGAAT 260238 Query 66444 GCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGT 66503 |||| ||||||| ||||||||| || | || ||||||||| ||||| || || |||| Sbjct 260237 GCCAAGGTTCCAAGTAGATGGCAAATGCACCAGGACGTTTGCCACCACCCTGATCAACGT 260178 Query 66504 AGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGG 66563 |||| || ||||| ||||| || | ||||| || || | || || || | ||||| | Sbjct 260177 AGCGTGCAACATTATTGAATACTCTTAACATGGGCACCAAACCATTGGAGGTTCCATTAG 260118 Query 66564 TGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGG 66623 ||||| | |||| | ||| || || || || ||||| | |||||||| || | Sbjct 260117 TGCCGGCTATGGAAGTTCCCTTAGCGCGAATGCAATGGACATTGATTCCAATACCTCCAG 260058 Query 66624 CCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCAC 66683 | | || || || |||||| | |||| | | || ||||| ||||| || || Sbjct 260057 CTGATTTGGAAATCATAGCACACTGCTCCACAGACTTAAAAATGCCCTCAATAGAATCGG 259998 Query 66684 CCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGA 66743 | ||||||| |||| | || ||| | ||| || |||||| || | || | Sbjct 259997 CAACCATGGTCAAGAGGAAACAAGAAGACAATTGTGGACGATTTGTGGCTGCAGCAAACA 259938 Query 66744 GGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAG 66803 ||||| | || || ||||||||| | |||| | || || || || ||| | | Sbjct 259937 ATGTGGGCGATGCATGGGTAAAGTAACGCTCGGACAACCAGTTATAAGTTTCAATGGCCG 259878 Query 66804 CATCAATGTTTTCGCCATGAATCCCGA-GTGCACATCGCATCAGGAGGTATTGAGGCCGT 66862 ||| |||| || |||||||| || | | |||| |||||||| | | ||| |||||| Sbjct 259877 AATCTATGTCCTCTCCATGAATACCTACGGCCACA-CGCATCAGCATATGTTGCGGCCGT 259819 Query 66863 TCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAG 66922 ||| | | | | | || || | || || || |||||||| || ||||| | |||||| Sbjct 259818 TCGGCAATCTTACCATTCATTTTCAATAGATATGAGCGTTCTAGAGTCTTAAATCCAAAG 259759 Query 66923 TA 66924 || Sbjct 259758 TA 259757 >seq305 Length=710094 Score = 381 bits (422), Expect = 5e-101 Identities = 523/725 (72%), Gaps = 7/725 (1%) Strand=Plus/Minus Query 61106 AGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACT 61165 |||| || || || || ||||| || ||||| || ||| |||| ||||| ||| ||||| Sbjct 409082 AGGCTGAGGCATCATTTTGGACTGTTGAGGAAGTGGATCTGTCTAAAGATATGTCTGACT 409023 Query 61166 GGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCG 61225 ||||| | | | |||| | |||||||| ||||||||||| |||||||| | Sbjct 409022 GGGAGAAACTCACAGACAATGAAAGATATTTCATTTCCCATGTGTTGGCTTTCTTTGCTG 408963 Query 61226 CTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGT 61285 | || || || || || ||||||||| | | || | || | || ||||||||||| Sbjct 408962 CCTCCGATGGCATAGTTAATGAGAATCTTGTCGAGAGATTTTCTCAAGAGGTGCAAGTAA 408903 Query 61286 CGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGT 61345 | || || || || ||||| |||||||||||||| ||||||||||| |||||||| |||| Sbjct 408902 CTGAAGCCCGCTGCTTCTATGGCTTCCAGATTGCTATGGAGAATGTTCACTCGGAAATGT 408843 Query 61346 ACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATG 61405 |||| |||| || || || || || | || || | |||||||| || ||||||| Sbjct 408842 ACAGCATTCTTATTGACACCTATATTAAAGATCGTGACCAACGTGAATATTTATTCAATG 408783 Query 61406 CCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCA 61465 |||| || || || || || || || | ||||| |||||||| || ||||| | || Sbjct 408782 CCATTGAAACTATGCCAGCTGTTAAAAGAAAAGCTGATTGGGCTTTGTCATGGAT-ATCA 408724 Query 61466 GTACA-ACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTT 61524 | | |||| ||||||||||| | | || ||||| | || || || |||| Sbjct 408723 TCGGATTCTGCTAATTTTGGTGAACGTGTAATAGCTTTTGCTGCTGTTGAAGGCATATTC 408664 Query 61525 TTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTG 61584 ||||| || |||||| | || || ||||||||||||||||| || |||||||| | Sbjct 408663 TTCAGCGGCAGTTTTGCCTCCATTTTCTGGTTGAAGAAACGTGGCCTAATGCCCGGCTTA 408604 Query 61585 ACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTG 61644 || ||| ||| ||| ||||||| || ||||| || ||||||||||||||||||| ||| Sbjct 408603 ACATTCTCCAACGAGCTGATATCGCGTGACGAAGGTTTGCATTGTGATTTTGCTGTATTG 408544 Query 61645 CTATTCAAACGCTATCTGGTG-AATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCG 61703 | || || ||||||||| | | || | || || ||| | |||||| | | Sbjct 408543 ATGTTTAA---GTATCTGGTGCAGAAGCCCAGCAGA-GAACGTATCATTGAGATAATAAG 408488 Query 61704 TGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGG 61763 || ||||| | |||||||||||||| || || || || ||||| | | || || Sbjct 408487 AGAAGCGGTTAAAATCGAACAGGAATTCCTTACAGAAGCATTGCCATGCAATTTGATTGG 408428 Query 61764 CATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGA 61823 |||||||||| ||||||| |||||||||||||||| || || |||||| | ||||| Sbjct 408427 TATGAATTGTGATTTAATGTCCGAGTATATTGAATTTGTAGCAGATCGTCTGCTAGTCGA 408368 Query 61824 TTTGG 61828 |||| Sbjct 408367 ATTGG 408363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397509652174880