Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq13104 174 7e-41 seq11968 158 5e-36 seq11967 158 5e-36 seq11815 120 1e-24 seq3210 120 1e-24 seq14264 105 3e-20 seq3198 98.7 4e-18 seq11886 87.8 7e-15 >seq13104 Length=7246 Score = 174 bits (192), Expect = 7e-41 Identities = 218/299 (73%), Gaps = 20/299 (7%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAA 464 || ||||||||| ||||||||||||| |||||| | | ||||||| |||||||| || Sbjct 3439 CGTCCCGTCTTGAAACACGGACCAAGAAGTCTAGTAGTTGTGCGAGTCATTGGGTGTAAA 3380 Query 465 ACCCGTGCGCGTAATGAAAGTGAACGGAGGT----GG---GA------ACCCGTGAG--- 508 || | | ||||||||||||| || || | || || | ||||| Sbjct 3379 ACTCATTGGCGTAATGAAAGTAAAGGGTCGCTTGCGGCCTGATATGTGATCCGTGGCTTG 3320 Query 509 ----GGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCT 564 || ||| ||| | || || || ||| ||| | ||| |||||||| || Sbjct 3319 CCGCGGCGCAACATAGCCCCATGTCTATTGCTTGCAATGATGTGGAGGTAGAGCATAACT 3260 Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 ||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||| Sbjct 3259 ACTGGAACCCGAAAGATGGTGAACTATGCCTGGGCAGGATGAAGCCAGAGGAAACTCTGG 3200 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| | || |||||||||| ||||||||||||||| || | |||||||||||||| Sbjct 3199 TGGAAGTCCGAAGCGGTTCTGACGTGCAAATCGATCGCCAGACCCGGGTATAGGGGCGA 3141 Score = 114 bits (126), Expect = 5e-23 Identities = 115/147 (78%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| |||||| |||| | |||||||| || |||||| || | |||| || ||||||| Sbjct 3929 GAGTAGAGTTGCTTGGAAGTGCAGCTCGAATTGGGAGTTATACCACTTCCAAGGCTAAAT 3870 Query 100 ATTGGCCAGA-GACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 | | ||| | ||||||||||| ||||||| |||| ||||| || |||| |||||| | Sbjct 3869 AC-GACCACAAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGCAAAGAACTTTGAA 3811 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTG 185 |||||||| || || |||||||| || Sbjct 3810 GAGAGAGTTCAAGAGGACGTGAAACTG 3784 >seq11968 Length=1024 Score = 158 bits (174), Expect = 5e-36 Identities = 116/135 (86%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| ||||||| | |||||||||||||||||||||||||||||| | ||| |||| Sbjct 320 GAGCAAGAGCACACACGTTGGGACCCGAAAGATGGTGAACTATGCCCGGGCAGGACGAAG 379 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| ||||||| ||||| ||||||||||||||||| | Sbjct 380 CCAGAGGAAACTCTGGTGGAGGTCCGCAGCGATTCTGACGTGCAAATCGATCGTCGGACC 439 Query 669 TGGGTATAGGGGCGA 683 ||||||||||||||| Sbjct 440 TGGGTATAGGGGCGA 454 >seq11967 Length=1154 Score = 158 bits (174), Expect = 5e-36 Identities = 116/135 (86%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| ||||||| | |||||||||||||||||||||||||||||| | ||| |||| Sbjct 809 GAGCAAGAGCACACACGTTGGGACCCGAAAGATGGTGAACTATGCCCGGGCAGGACGAAG 750 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| ||||||| ||||| ||||||||||||||||| | Sbjct 749 CCAGAGGAAACTCTGGTGGAGGTCCGCAGCGATTCTGACGTGCAAATCGATCGTCGGACC 690 Query 669 TGGGTATAGGGGCGA 683 ||||||||||||||| Sbjct 689 TGGGTATAGGGGCGA 675 >seq11815 Length=1261 Score = 120 bits (132), Expect = 1e-24 Identities = 119/153 (78%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 31 TCCTTCGAC-GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCT 89 |||||| | |||||| |||| ||| || |||||| |||| ||| |||||| | | || Sbjct 668 TCCTTCCTCAGAGTCGGGTTGCTTGAGAGTGCAGCCCTAAGCGGGTGGTAAACTCCACCT 609 Query 90 AAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAG 149 || ||||||||| | ||||||||||||| ||||||| |||| ||||| || |||| Sbjct 608 AAGGCTAAATATCACCACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGCAAAG 549 Query 150 CACTTTGGAAAGAGAGTTAAAAAGCACGTGAAA 182 |||||| | |||||||| || || |||||||| Sbjct 548 AACTTTGAAGAGAGAGTTCAAGAGTACGTGAAA 516 >seq3210 Length=1094 Score = 120 bits (132), Expect = 1e-24 Identities = 119/153 (78%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 31 TCCTTCGAC-GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCT 89 |||||| | |||||| |||| ||| || |||||| |||| ||| |||||| | | || Sbjct 262 TCCTTCCTCAGAGTCGGGTTGCTTGAGAGTGCAGCCCTAAGCGGGTGGTAAACTCCACCT 321 Query 90 AAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAG 149 || ||||||||| | ||||||||||||| ||||||| |||| ||||| || |||| Sbjct 322 AAGGCTAAATATCACCACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGCAAAG 381 Query 150 CACTTTGGAAAGAGAGTTAAAAAGCACGTGAAA 182 |||||| | |||||||| || || |||||||| Sbjct 382 AACTTTGAAGAGAGAGTTCAAGAGTACGTGAAA 414 >seq14264 Length=339601 Score = 105 bits (116), Expect = 3e-20 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 ||| || ||||||| ||||||||||| | ||| ||||||||||||||||||| || | Sbjct 65017 GGAACCAAAAGATGATGAACTATGCCCGGCCAGGACGAAGCCAGAGGAAACTCTGATGAA 64958 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679 | ||||||| ||||| ||||||||||||||||| | ||| ||||||| Sbjct 64957 AGTTCGCAGCAATTCTGACGTGCAAATCGATCGTCGGACCTGGATATAGGG 64907 >seq3198 Length=1009 Score = 98.7 bits (108), Expect = 4e-18 Identities = 71/82 (87%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| ||||||| | |||||||||||||||||||||||||||||| | ||| |||| Sbjct 923 GAGCAAGAGCACACACGTTGGGACCCGAAAGATGGTGAACTATGCCCGGGCAGGACGAAG 982 Query 609 CCAGAGGAAACTCTGGTGGAGG 630 |||||||||||||||||||||| Sbjct 983 CCAGAGGAAACTCTGGTGGAGG 1004 >seq11886 Length=1004 Score = 87.8 bits (96), Expect = 7e-15 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAA-CTATGCCTGAATAGGGTGAA 607 ||| ||||||| | ||||||||||||||||||||||| ||||||| | ||| ||| Sbjct 925 GAGCAAGAGCACACACGTTGGGACCCGAAAGATGGTGAAACTATGCCCGGGCAGGACGAA 984 Query 608 GCCAGAGGAAACTCTGGTGG 627 |||||||||||||||||||| Sbjct 985 GCCAGAGGAAACTCTGGTGG 1004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079683848450