Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq13104 196 8e-48 seq3446 176 7e-42 seq3307 176 7e-42 seq3498 105 1e-20 seq13399 91.5 2e-16 >seq13104 Length=7246 Score = 196 bits (216), Expect = 8e-48 Identities = 192/243 (79%), Gaps = 6/243 (2%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 |||||||||||||||||||||| | ||||| |||||||||||||||||||||||||| | Sbjct 5230 CAGTGTAGCGCGCGTGCGGCCCCGGACATCGAAGGGCATCACAGACCTGTTATTGCCGCT 5289 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC-AGCCACCAACCATAGTCG 135 | || || || ||||| | |||| |||||||| | | ||| || | Sbjct 5290 TA--TCGTGTGACTTATAGCCACTTATCCCACTAAGAAGTTGAACTGACAAAGTTATCAG 5347 Query 136 ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACT 195 | |||||||| ||||| ||||||||||||||||| ||| || ||||||||||| | Sbjct 5348 ACAA--CTATTTAG-AGGTTGCGGTCTCGTTCGTTATCGCAATAAAGCAGACAAATCAAT 5404 Query 196 CCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255 |||| ||||||||||||||||||||||||| ||| ||||||||||| | || ||||||| Sbjct 5405 CCACGAACTAAGAACGGCCATGCACCACCAACCACCGAATCAAGAAAAAACTCTCAATCT 5464 Query 256 GTC 258 ||| Sbjct 5465 GTC 5467 >seq3446 Length=1126 Score = 176 bits (194), Expect = 7e-42 Identities = 109/117 (93%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||||||| |||| || |||||||||||||||||||||||||||||||||| |||||||| Sbjct 384 CTATTTAACAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 443 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| |||||||||||||||| |||||||||| Sbjct 444 ACTAAGAACGGCCATGCACCACCACCCACTGAATCAAGAAAGAGCTCTCAATCTGTC 500 Score = 78.8 bits (86), Expect = 1e-12 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 30 GTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGC 89 ||||||||| | |||||||||||||||||||||||||||||| ||||| | || ||| Sbjct 1 GTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATC-TCGTGCGGC 58 Query 90 TGGAAGCCAATAGTCCCTCTAAGAAGC 116 || ||| | |||||| |||||||| Sbjct 59 TGAGCGCCGCTTGTCCCTTTAAGAAGC 85 >seq3307 Length=1370 Score = 176 bits (194), Expect = 7e-42 Identities = 109/117 (93%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||||||| |||| || |||||||||||||||||||||||||||||||||| |||||||| Sbjct 1050 CTATTTAACAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 991 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| |||||||||||||||| |||||||||| Sbjct 990 ACTAAGAACGGCCATGCACCACCACCCACTGAATCAAGAAAGAGCTCTCAATCTGTC 934 >seq3498 Length=1779 Score = 105 bits (116), Expect = 1e-20 Identities = 88/105 (84%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 1559 TCCTTCAGTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG 1618 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC 116 ||||| | || ||||| ||| | |||||| |||||||| Sbjct 1619 -CTCAATC-TCGTGCGGCTGAGCGCCGCTTGTCCCTTTAAGAAGC 1661 >seq13399 Length=567187 Score = 91.5 bits (100), Expect = 2e-16 Identities = 57/60 (95%), Gaps = 1/60 (2%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGAC-AAATCACTCCACCAACTAAGAACGGCCATG 217 ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||| Sbjct 60447 GTCTCGTTCGTTATCGGAATTAACCAGACAAAATCGCTCCACCAACTAAGAACGGTCATG 60506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796686229659