Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq4123 109 6e-22 seq3446 109 6e-22 seq3307 109 6e-22 seq4003 107 2e-21 seq3796 104 2e-20 >seq4123 Length=1204 Score = 109 bits (120), Expect = 6e-22 Identities = 139/189 (74%), Gaps = 8/189 (4%) Strand=Plus/Minus Query 4 ACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTT------TGCTCGA 57 ||| | || ||||||||||| ||||||||| | || |||||||| || || || Sbjct 374 ACCGGAACCTTTACTTTGAACAAATTAGAGTGCTCCAAGCAGGCGTTCAAACACGCCCGT 315 Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGG-A 116 ||| | ||||||||||| ||||||||| | |||||||||||||| ||||| | || | Sbjct 314 ATAGCCCAGCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTTTTCGGAA 256 Query 117 CCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAA 176 || |||||||| |||| ||| | |||||| | ||||| | | ||||||| Sbjct 255 CCCGAGGTAATGATTAATAGGGACGGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAA 196 Query 177 ATTCTTGGA 185 ||||||||| Sbjct 195 ATTCTTGGA 187 >seq3446 Length=1126 Score = 109 bits (120), Expect = 6e-22 Identities = 139/189 (74%), Gaps = 8/189 (4%) Strand=Plus/Minus Query 4 ACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTT------TGCTCGA 57 ||| | || ||||||||||| ||||||||| | || |||||||| || || || Sbjct 1005 ACCGGAACCTTTACTTTGAACAAATTAGAGTGCTCCAAGCAGGCGTTCAAACACGCCCGT 946 Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGG-A 116 ||| | ||||||||||| ||||||||| | |||||||||||||| ||||| | || | Sbjct 945 ATAGCCCAGCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTTTTCGGAA 887 Query 117 CCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAA 176 || |||||||| |||| ||| | |||||| | ||||| | | ||||||| Sbjct 886 CCCGAGGTAATGATTAATAGGGACGGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAA 827 Query 177 ATTCTTGGA 185 ||||||||| Sbjct 826 ATTCTTGGA 818 >seq3307 Length=1370 Score = 109 bits (120), Expect = 6e-22 Identities = 139/189 (74%), Gaps = 8/189 (4%) Strand=Plus/Plus Query 4 ACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTT------TGCTCGA 57 ||| | || ||||||||||| ||||||||| | || |||||||| || || || Sbjct 428 ACCGGAACCTTTACTTTGAACAAATTAGAGTGCTCCAAGCAGGCGTTCAAACACGCCCGT 487 Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGG-A 116 ||| | ||||||||||| ||||||||| | |||||||||||||| ||||| | || | Sbjct 488 ATAGCCCAGCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTTTTCGGAA 546 Query 117 CCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAA 176 || |||||||| |||| ||| | |||||| | ||||| | | ||||||| Sbjct 547 CCCGAGGTAATGATTAATAGGGACGGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAA 606 Query 177 ATTCTTGGA 185 ||||||||| Sbjct 607 ATTCTTGGA 615 >seq4003 Length=1017 Score = 107 bits (118), Expect = 2e-21 Identities = 139/190 (73%), Gaps = 9/190 (5%) Strand=Plus/Plus Query 4 ACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTT------TGCTCGA 57 ||| | || ||||||||||| ||||||||| | || |||||||| || || || Sbjct 768 ACCGGAACCTTTACTTTGAACAAATTAGAGTGCTCCAAGCAGGCGTTCAAACACGCCCGT 827 Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGG-- 115 ||| | ||||||||||| ||||||||| | |||||||||||||| ||||| | || Sbjct 828 ATAGCCCAGCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTTTTCGGTA 886 Query 116 ACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGA 175 ||| |||||||| |||| ||| | |||||| | ||||| | | |||||| Sbjct 887 ACCCGAGGTAATGATTAATAGGGACGGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGA 946 Query 176 AATTCTTGGA 185 |||||||||| Sbjct 947 AATTCTTGGA 956 >seq3796 Length=1019 Score = 104 bits (114), Expect = 2e-20 Identities = 139/190 (73%), Gaps = 9/190 (5%) Strand=Plus/Minus Query 4 ACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTT------TGCTCGA 57 ||| | || ||||||||||| ||||||||| | || |||||||| || || || Sbjct 320 ACCGGAACCTTTACTTTGAACAAATTAGAGTGCTCCAAGCAGGCGTTCAAACACGCCCGT 261 Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGG-A 116 ||| | ||||||||||| ||||||||| | |||||||||||||| ||||| | || | Sbjct 260 ATAGCCCAGCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTTTTCGGAA 202 Query 117 CCGCCCGTAATGATAAATA-CGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGA 175 || |||||||| |||| ||| | |||||| | ||||| | | |||||| Sbjct 201 CCCGAGGTAATGATTAATAGGGGACGGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGA 142 Query 176 AATTCTTGGA 185 |||||||||| Sbjct 141 AATTCTTGGA 132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511926894560