Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq3498 206 5e-51 seq13104 179 7e-43 seq3446 84.2 4e-14 >seq3498 Length=1779 Score = 206 bits (228), Expect = 5e-51 Identities = 208/261 (80%), Gaps = 7/261 (3%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||| |||||| | |||| | ||||| || | ||||| ||||||||||||||| Sbjct 1661 GCTTCTTAAAGGGACAAGCGGCGCTCAGCCGCACGA-GATTGAG-CAATAACAGGTCTGT 1604 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TCAT 188 ||||||||||||||| | ||||||||||||||||||||||| || || || || | | Sbjct 1603 GATGCCCTTAGATGTCCGGGGCCGCACGCGCGCTACACTGAAGGAATCAGCGTGTGTTCT 1544 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGAT-AGAGCA 247 | || | |||||||| |||||||| | | || ||| ||||| | ||||| |||| Sbjct 1543 CTCCCGGTCCGGAAGGACTGGGTAACCCGTTGAACCTCCTTCGTGATAGGGATCGGAGC- 1485 Query 248 TTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307 ||| |||||| | | |||||||||| || |||||||||| ||||| ||| ||||||| Sbjct 1484 TTGAAATTATCCTCCGTGAACGAGGAATTCCCAGTAAGCGCGAGTCAT-AGCTCGCGTTG 1426 Query 308 ATTACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||||| Sbjct 1425 ATTACGTCCCTGCCCTTTGTA 1405 >seq13104 Length=7246 Score = 179 bits (198), Expect = 7e-43 Identities = 170/216 (79%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 113 GGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACA 172 |||||||||||||||||||||||||| ||||| | |||||||||||||||||||||| | Sbjct 5286 GGCAATAACAGGTCTGTGATGCCCTTCGATGTCCGGGGCCGCACGCGCGCTACACTGGTA 5227 Query 173 GAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGT 232 || || || | || ||| || | || | ||||||| || | ||| | | | Sbjct 5226 AGATCAGCGCGTCCTTC--CTTAGCTGAAAAGCTTGGGTAAACTATTGAAAACTTACCAT 5169 Query 233 GCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGT 292 | | ||||||| |||||| ||||||||| |||||||||||||| || ||||| | | || Sbjct 5168 GATTGGGATAGGGCATTGAAATTATTGCCCTTCAACGAGGAATTCCCAGTAAACTTGAGT 5109 Query 293 CATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||| | |||||||||||||||||||||||| Sbjct 5108 CATCAGCTCAAATTGATTACGTCCCTGCCCTTTGTA 5073 >seq3446 Length=1126 Score = 84.2 bits (92), Expect = 4e-14 Identities = 73/87 (84%), Gaps = 3/87 (3%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||| |||||| | |||| | ||||| || | ||||| ||||||||||||||| Sbjct 85 GCTTCTTAAAGGGACAAGCGGCGCTCAGCCGCACGA-GATTGAG-CAATAACAGGTCTGT 28 Query 130 GATGCCCTTAGATGTTCTGGGCCGCAC 156 ||||||||||||||| | ||||||||| Sbjct 27 GATGCCCTTAGATGTCCGGGGCCGCAC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947060392192