Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq13941 159 3e-34 seq13338 138 9e-28 seq13458 134 1e-26 seq477 125 6e-24 seq13827 98.7 8e-16 >seq13941 Length=98454 Score = 159 bits (176), Expect = 3e-34 Identities = 237/335 (71%), Gaps = 1/335 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 || ||||||||| || | || ||||| | ||| ||||| |||||||| || ||||| Sbjct 98034 CAAGAGGTGCAAATGACCGAAGCGCGATTTTTTTACGGATTCCAGATCATGATCGAGAAC 98093 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGT 61389 || |||||||| ||||||||| || | ||| |||||||||| ||| | | | || Sbjct 98094 GTGCACTCGGAAATGTACAGTCTTTTGATCAATACGTACATTCAGGACTCGATGAAGCGA 98153 Query 61390 GAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCC 61449 | | ||||| ||||| ||||||||||| ||| ||| ||| ||| ||||| Sbjct 98154 CATCATTTGTTTAATGCGATCGAGACGATTCCGTGCGTGCGTAAGAAGGCGTTGTGGGCG 98213 Query 61450 TTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTG 61509 || |||||||| | | ||||| || || || || ||| | | || || |||| | Sbjct 98214 CTCGATTGGATCGGGAACAAGACGGCGACGTTCGGCGAGCGAGTTGTAGCTTTCGCGGCG 98273 Query 61510 GTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGA 61569 || || || | |||||| || || || || | || |||||| |||| ||||| || Sbjct 98274 GTTGAAGGGATTTTTTTCTCGGGGTCTTTCGCGTCGATTTTTTGGATGAA-AAACGAGGT 98332 Query 61570 CTTATGCCCGGTCTGACCTTCAGCAATGAGTTGAT 61604 || ||||| || |||| ||||||||||| ||||| Sbjct 98333 CTCATGCCTGGATTGACGTTCAGCAATGAATTGAT 98367 Score = 89.7 bits (98), Expect = 4e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 |||| || || ||| | || ||||| | || ||||| | ||||| ||| ||||| | | Sbjct 96794 ATGAGCCGCTTTTGAAGGAAAATCCAGGCCGGTTCGTGATTTTCCCGATCCAGTATCACG 96853 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATT 61144 || | ||| ||||||||||| || | |||||| |||||||| | || || ||||||| Sbjct 96854 ATGTGTGGAAAATGTACAAAAAAGCTGTAGCTTCGTTCTGGACTGCCGAAGAAGTCGATT 96913 Query 61145 TGTCCAAAG 61153 | ||||||| Sbjct 96914 TATCCAAAG 96922 >seq13338 Length=646138 Score = 138 bits (152), Expect = 9e-28 Identities = 257/372 (69%), Gaps = 4/372 (1%) Strand=Plus/Minus Query 61249 AATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGC 61308 |||| |||||||| ||| || |||||| || | |||| || |||| ||| || || Sbjct 454390 AATTAGTTGGAACGGTTCAGTCAAGAGGTGAAAATCACGGAAGCTCGTTTTTTTTATGGA 454331 Query 61309 TTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTAC 61368 ||||| ||||| || |||||| |||| || ||||||||||| || | || |||| ||| Sbjct 454330 TTCCAAATTGCGATTGAGAATATCCATTCCGAGATGTACAGCCTTTTGATAAATACTTAC 454271 Query 61369 ATCAGGGAGCGGGCGGAACGTGAACGA-TTGTTCAATGCCATCGAGACGATACCGGCGGT 61427 ||| || | | ||| ||| | |||||||| || ||||||||||| || || Sbjct 454270 ATCCAAGA-CACGATGAAAAGAAACTATTTGTTCAACGCGATCGAGACGATGCCATGTGT 454212 Query 61428 GAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGA 61487 | ||| ||| ||||| | | |||||| | | |||||| || || || || Sbjct 454211 GCGCAAGAAGGCGTTGTGGGCTCTTGACTGGATCGGAAACAAAACGGCGACGTTCGGCGA 454152 Query 61488 ACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAAT 61547 ||| | | || ||||||| || || || | || || || || || || |||| Sbjct 454151 GCGAATCATCGCTTTTGCGGCCGTAGAAGGCATCTTCTTTTCCGGTTCATTCGCGTCAAT 454092 Query 61548 CTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGAT-AT 61606 |||||| | |||||||| || || |||||||| |||| ||||| || || || || | Sbjct 454091 ATTTTGGCTAAAGAAACGCGGTCTGATGCCCGGATTGACGTTCAGTAACGAATTAATCAG 454032 Query 61607 CACGCGACGAGG 61618 || | ||||||| Sbjct 454031 CA-GAGACGAGG 454021 >seq13458 Length=7495 Score = 134 bits (148), Expect = 1e-26 Identities = 238/347 (69%), Gaps = 0/347 (0%) Strand=Plus/Plus Query 61255 TTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAG 61314 |||||||| ||| || |||||| || | |||| || |||| ||| || || ||||| Sbjct 6158 TTGGAACGGTTCAGTCAAGAGGTGAAAATCACGGAAGCTCGTTTTTTTTATGGATTCCAA 6217 Query 61315 ATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGG 61374 ||||| || |||||| || | || |||||||||||| || | || |||| |||||| | Sbjct 6218 ATTGCGATTGAGAATATCTATTCTGAGATGTACAGTCTTTTGATAAATACTTACATCCAG 6277 Query 61375 GAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGG 61434 || | | || | | |||||||| || ||||||||||| || ||| | Sbjct 6278 GACACGATGAAAAGAAATTATTTGTTCAACGCAATCGAGACGATGCCTTGTGTGCGCAAG 6337 Query 61435 AAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTG 61494 || ||| ||||| | | ||||||| | | |||||| |||||||| || ||| | Sbjct 6338 AAGGCGTTGTGGGCTCTTGACTGGATCAGAAACAAAACGGCGACATTTGGCGAGCGAATC 6397 Query 61495 CTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGG 61554 | || || |||| || || || | || || | || || || | || |||||| Sbjct 6398 ATCGCTTTCGCGGCCGTAGAAGGCATCTTCTTTTCCGCTTCATTCGCGTCGATATTTTGG 6457 Query 61555 TTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTT 61601 | |||||||| || || |||||||| |||| ||||| || || || Sbjct 6458 CTAAAGAAACGCGGTCTGATGCCCGGATTGACGTTCAGTAACGAATT 6504 Score = 120 bits (132), Expect = 2e-22 Identities = 247/365 (68%), Gaps = 2/365 (1%) Strand=Plus/Plus Query 61255 TTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAG 61314 |||||||| ||| || |||||| || | |||| || |||| ||| || || ||||| Sbjct 2547 TTGGAACGGTTCAGTCAAGAGGTGAAAATCACGGAAGCTCGTTTTTTTTATGGATTCCAA 2606 Query 61315 ATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGG 61374 ||||| || |||||| || | || ||||||||||| || | || |||| |||||| | Sbjct 2607 ATTGCGATTGAGAATATCTATTCTGAGATGTACAGCCTTTTGATAAATACTTACATCCAG 2666 Query 61375 GAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGG 61434 || | | || | | |||||||| || ||||||||||| || ||| | Sbjct 2667 GACACGATGAAAAGAAATTATTTGTTCAACGCGATCGAGACGATGCCTTGTGTGCGCACG 2726 Query 61435 AAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTG 61494 || ||| ||||| | | |||||| | | |||||| ||||| || || ||| | Sbjct 2727 AAGGCGTTGTGGGCTCTTGACTGGATCGGAAACAAAACGGCGACATTCGGCGAGCGAATC 2786 Query 61495 CTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGG 61554 | || | |||| || || || | || || | || || || | || |||||| Sbjct 2787 ATCGCTTACGCGGCCGTAGAAGGCATCTTCTTTTCCGCTTCATTCGCGTCGATATTTTGG 2846 Query 61555 TTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGAT-ATCACGCGA 61613 | |||||||| || || |||||||| |||| ||||| || || || || | || | || Sbjct 2847 CTAAAGAAACGCGGTCTGATGCCCGGATTGACGTTCAGTAACGAATTAATCAGCA-GAGA 2905 Query 61614 CGAGG 61618 ||||| Sbjct 2906 CGAGG 2910 >seq477 Length=28440 Score = 125 bits (138), Expect = 6e-24 Identities = 249/365 (68%), Gaps = 3/365 (1%) Strand=Plus/Minus Query 61255 TTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAG 61314 |||||||| ||| || |||||| || | |||| || |||| ||| || || ||||| Sbjct 7545 TTGGAACGGTTCAGTCAAGAGGTGAAAATCACGGAAGCTCGTTTTTT-TATGGATTCCAA 7487 Query 61315 ATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGG 61374 ||||| || |||||| || | || ||||||||||| || | || |||| |||||| | Sbjct 7486 ATTGCGATTGAGAATATCTATTCTGAGATGTACAGCCTTTTGATAAATACTTACATCCAG 7427 Query 61375 GAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGG 61434 || | | || | | |||||||| || ||||||||||| || ||| | Sbjct 7426 GACACGATGAAAAGAAATTATTTGTTCAACGCGATCGAGACGATGCCTTGTGTGCGCAAG 7367 Query 61435 AAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTG 61494 || ||| ||||| | | |||||| | | |||||| ||||| || |||||| | Sbjct 7366 AAGGCGTTGTGGGCTCTTGACTGGATCGGAAACAAAACGGCGACATTCGGCGAACGAATC 7307 Query 61495 CTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGG 61554 | || || |||| || || || | || || | || || || | || |||||| Sbjct 7306 ATCGCTTTCGCGGCCGTAGAAGGCATCTTCTTTTCCGCTTCATTCGCGTCGATATTTTGG 7247 Query 61555 TTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGAT-ATCACGCGA 61613 | |||||||| || || |||||||| |||| ||||| || || || || | || | || Sbjct 7246 CTAAAGAAACGCGGTCTGATGCCCGGATTGACGTTCAGTAACGAATTAATCAGCA-GAGA 7188 Query 61614 CGAGG 61618 ||||| Sbjct 7187 CGAGG 7183 >seq13827 Length=723868 Score = 98.7 bits (108), Expect = 8e-16 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 66033 CTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGG 66092 ||| ||| || |||| | ||||||| |||||||||||||| ||||||||| || | Sbjct 454842 CTACCTCTTCGGGAGAACTGTACTCGATAATTTCGGTGCACAAATTACTGCATTTGATCG 454783 Query 66093 TGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAG 66152 | || ||||| | || ||||| || ||||||| || ||||||||| ||| |||||| | Sbjct 454782 TTCCTAAATTTTTCTGGTTACTTTTTCGATTGCTCGCGTCCTTGTACGTCAAGTACGGTG 454723 Query 66153 TGCCGGTCTCAACTTGGGACTC 66174 | || || || || || || || Sbjct 454722 TACCTGTTTCCACCTGAGATTC 454701 Score = 98.7 bits (108), Expect = 8e-16 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 65414 AAGTGACGATTGATGACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGAC 65473 |||||| |||||| | |||||| ||||| || || || ||||| |||||||||| | Sbjct 455721 AAGTGATGATTGACCATTTGGAATTCGCCCGAAAGAACCCGACGAGTATAGATGTTGCTC 455662 Query 65474 GTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATG 65533 ||| | ||| | ||||| ||||||| |||||||| || || || ||||||||||| Sbjct 455661 GTGTACGCTTCGATCGATTCGTTGTTGCCAAGAATTTGCGCGGTTGACGCAGTTGGCATC 455602 Query 65534 GGAGCGA 65540 ||||||| Sbjct 455601 GGAGCGA 455595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397496584238960