Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq5770 295 1e-77 SEQ10664 264 2e-68 SEQ19278 118 2e-24 seq5954 118 2e-24 >seq5770 Length=6364 Score = 295 bits (326), Expect = 1e-77 Identities = 207/230 (90%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||||||||||| | Sbjct 4009 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGAATT-C 3952 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | | ||| | |||||| Sbjct 3951 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACGGAGTTTAACAAGATT 3892 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAG-ACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||||||||| |||||||||| |||| |||||||| | | |||||||||||||||||| Sbjct 3891 ACCCGGACCTCTCGGCCAAGG--ATAGTACTCGTTGGCTCCGTCAGTGTAGCGCGCGTGC 3834 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 |||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 3833 GGCCCAGAACGTCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 3784 >SEQ10664 Length=18453 Score = 264 bits (292), Expect = 2e-68 Identities = 200/229 (87%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||||||||||| | Sbjct 1625 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGAATT-C 1568 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||| ||||| |||||||||| ||||| | | ||||| |||||| Sbjct 1567 CTCGTTGAAGAGCAATAATTACAATGCTCTATCCCCAGCACGACGGAGTTTCACAAGATT 1508 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| |||| |||| |||| | || |||| || | | ||||||||||||||||||| Sbjct 1507 ACCCAAACCTCTCGGTTAAGGAAA-AG-CTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCG 1450 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1449 GCCCAGAACGTCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 1401 Score = 264 bits (292), Expect = 2e-68 Identities = 200/229 (87%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||||||||||| | Sbjct 9966 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGAATT-C 9909 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||| ||||| |||||||||| ||||| | | ||||| |||||| Sbjct 9908 CTCGTTGAAGAGCAATAATTACAATGCTCTATCCCCAGCACGACGGAGTTTCACAAGATT 9849 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| |||| |||| |||| | || |||| || | | ||||||||||||||||||| Sbjct 9848 ACCCAAACCTCTCGGTTAAGGAAA-AG-CTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCG 9791 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 9790 GCCCAGAACGTCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 9742 >SEQ19278 Length=35962 Score = 118 bits (130), Expect = 2e-24 Identities = 168/224 (75%), Gaps = 17/224 (8%) Strand=Plus/Minus Query 3 ACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCT 62 |||||||||||| |||||||||| ||||| || ||||||| | || ||||||| || || Sbjct 3126 ACAAAGGGCAGGAACGTAGTCAATGCGAG-TTAATGACTCACACTAACTAGGACTT-CCA 3069 Query 63 CGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT--TTCAAAGATT- 119 || | | |||| || || | | ||||| | || || || | |||| | || Sbjct 3068 AATTCATGTG-AACAGTTTCAGTCCACAATCCCAAGCATGA--AAGTGGTTCAGCGGTTT 3012 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGTGC 178 |||||||||| |||| | ||| ||| || ||||| ||| | || |||||||||||||| Sbjct 3011 ACCCGGACCTCTCGGTCTAGGAAATACAC--GTTGA-TACTTTCATTGTAGCGCGCGTGC 2955 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 |||||| ||||||||||| || |||||||||||| ||||| Sbjct 2954 AGCCCAGGACATCTAAGGG----ACCGACCTGTTATTG-CTCAA 2916 >seq5954 Length=10359 Score = 118 bits (130), Expect = 2e-24 Identities = 168/224 (75%), Gaps = 17/224 (8%) Strand=Plus/Minus Query 3 ACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCT 62 |||||||||||| |||||||||| ||||| || ||||||| | || ||||||| || || Sbjct 8800 ACAAAGGGCAGGAACGTAGTCAATGCGAG-TTAATGACTCACACTAACTAGGACTT-CCA 8743 Query 63 CGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT--TTCAAAGATT- 119 || | | |||| || || | | ||||| | || || || | |||| | || Sbjct 8742 AATTCATGTG-AACAGTTTCAGTCCACAATCCCAAGCATGA--AAGTGGTTCAGCGGTTT 8686 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGTGC 178 |||||||||| |||| | ||| ||| || ||||| ||| | || |||||||||||||| Sbjct 8685 ACCCGGACCTCTCGGTCTAGGAAATACAC--GTTGA-TACTTTCATTGTAGCGCGCGTGC 8629 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 |||||| ||||||||||| || |||||||||||| ||||| Sbjct 8628 AGCCCAGGACATCTAAGGG----ACCGACCTGTTATTG-CTCAA 8590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751816840530