Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq5770 331 1e-88 SEQ10664 298 9e-79 seq9382 145 1e-32 SEQ10610 95.1 2e-17 seq4062 95.1 2e-17 >seq5770 Length=6364 Score = 331 bits (366), Expect = 1e-88 Identities = 229/258 (89%), Gaps = 1/258 (0%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 3866 TACTCGTTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACGTCTAAGGGCATCACAG 3807 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||||| | || ||| | ||||||||||||||||| | Sbjct 3806 ACCTGTTATTGCCTCAAACTTCCATCGACTTGAAATCGATAGTCCCTCTAAGAAGA-ACA 3748 Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 | || | | || || | |||||||| |||||||||||||||||||||||| ||||| Sbjct 3747 AATCAGCAAAAGCTAATAGTCCTATTTAGTAGGTTAAGGTCTCGTTCGTTATCGCAATTA 3688 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 | ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 3687 AGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGA 3628 Query 241 AAGAGCTATCAATCTGTC 258 ||||||| |||||||||| Sbjct 3627 AAGAGCTCTCAATCTGTC 3610 >SEQ10664 Length=18453 Score = 298 bits (330), Expect = 9e-79 Identities = 221/256 (86%), Gaps = 3/256 (1%) Strand=Plus/Minus Query 3 CTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 62 |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1481 CTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACGTCTAAGGGCATCACAGAC 1422 Query 63 CTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCA 122 ||||||||||||||||||||||| | || ||| | |||||||| ||||||| | | Sbjct 1421 CTGTTATTGCCTCAAACTTCCATCGACTTGAAATCGATAGTCCCCATAAGAAG--ATTTA 1364 Query 123 CCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAAC 182 ||| | | | | ||||||| ||||||||||||||||||||||| |||||| Sbjct 1363 CCAGCAAATGCCAGCAACTCTATTTAAG-GGTTAAGGTCTCGTTCGTTATCGCAATTAAG 1305 Query 183 CAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAA 242 ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| Sbjct 1304 CAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGAAA 1245 Query 243 GAGCTATCAATCTGTC 258 ||||| |||||||||| Sbjct 1244 GAGCTCTCAATCTGTC 1229 Score = 298 bits (330), Expect = 9e-79 Identities = 221/256 (86%), Gaps = 3/256 (1%) Strand=Plus/Minus Query 3 CTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 62 |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 9822 CTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACGTCTAAGGGCATCACAGAC 9763 Query 63 CTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCA 122 ||||||||||||||||||||||| | || ||| | |||||||| ||||||| | | Sbjct 9762 CTGTTATTGCCTCAAACTTCCATCGACTTGAAATCGATAGTCCCCATAAGAAG--ATTTA 9705 Query 123 CCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAAC 182 ||| | | | | ||||||| ||||||||||||||||||||||| |||||| Sbjct 9704 CCAGCAAATGCCAGCAACTCTATTTAAG-GGTTAAGGTCTCGTTCGTTATCGCAATTAAG 9646 Query 183 CAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAA 242 ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| Sbjct 9645 CAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGAAA 9586 Query 243 GAGCTATCAATCTGTC 258 ||||| |||||||||| Sbjct 9585 GAGCTCTCAATCTGTC 9570 >seq9382 Length=868517 Score = 145 bits (160), Expect = 1e-32 Identities = 94/102 (92%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| Sbjct 313472 GTCTCGTTCGTTATCGGAATTAACCAGACAAGTCACTCCACGAACTAAGAACGGCCATGC 313531 Query 219 ACCACCACCCATAGAATC--AAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||| || ||||||| |||||||||||| Sbjct 313532 ACCACCACCCATAGATTCGAGAGAAAGAATTATCAATCTGTC 313573 >SEQ10610 Length=13341 Score = 95.1 bits (104), Expect = 2e-17 Identities = 76/91 (84%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 165 TTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACC 224 || ||| | |||||||||||||||||||||| ||| ||||| ||||| |||||||| ||| Sbjct 8144 TTTGTTTTGGGAATTAACCAGACAAATCACTTCACAAACTATGAACGACCATGCACAACC 8203 Query 225 ACCCATAGAATCAAGAAAGAGCTATCAATCT 255 | ||||||| || || |||||| | ||||| Sbjct 8204 ATCCATAGATTC--GAGAGAGCTTTAAATCT 8232 >seq4062 Length=169333 Score = 95.1 bits (104), Expect = 2e-17 Identities = 76/91 (84%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 165 TTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACC 224 || ||| | |||||||||||||||||||||| ||| ||||| ||||| |||||||| ||| Sbjct 12173 TTTGTTTTGGGAATTAACCAGACAAATCACTTCACAAACTATGAACGACCATGCACAACC 12114 Query 225 ACCCATAGAATCAAGAAAGAGCTATCAATCT 255 | ||||||| || || |||||| | ||||| Sbjct 12113 ATCCATAGATTC--GAGAGAGCTTTAAATCT 12085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796605928902