Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value SEQ14764 414 2e-113 SEQ17146 300 3e-79 >SEQ14764 Length=5928 Score = 414 bits (458), Expect = 2e-113 Identities = 296/337 (88%), Gaps = 4/337 (1%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| | ||| ||||||| |||||||||||||| |||||||||||| || | ||| Sbjct 4903 CTTTACAACCATAAGGCCTTCTT-CACACACGCGGCAT-GGCTGGATCAGGGTTCCCCCC 4960 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 4961 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 5020 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| | ||||||||||||||||| | ||| ||||||||||||||| ||| ||||| || Sbjct 5021 TGTGGCGGATCATCCTCTCAGACCCGCTACAGATCGTCGCCTTGGTAGGCCTTTACCCCA 5080 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAA--GGTCCCCTGC 238 |||||||||||||||||| ||||||||||| |||||||||| | || | |||||||| Sbjct 5081 CCAACTAGCTAATCCGACTTAGGCTCATCTATTAGCGCAAGGTCACAAGTGATCCCCTGC 5140 Query 239 TTTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACC 298 |||||||||||||||||||||||||||||| ||| |||| | ||| ||||||| || Sbjct 5141 TTTCTCCCGTAGGACGTATGCGGTATTAGCATCCCTTTCGAGATGTTGTCCCCCATTAAT 5200 Query 299 AGGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 ||||||||||||| | ||||||||||||||||||||| Sbjct 5201 AGGCAGATTCCTAAGTATTACTCACCCGTCCGCCGCT 5237 >SEQ17146 Length=6450 Score = 300 bits (332), Expect = 3e-79 Identities = 272/337 (81%), Gaps = 18/337 (5%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| Sbjct 5405 CTTTACAATCCGAAGACCTTCTT-CACACACGCGGCATTG-CTGGATCAGGCTTTCGCCC 5462 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 5463 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 5522 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||| ||||| || |||| |||||||||| ||| ||||| || Sbjct 5523 TGTGGCTGATCATCCTCTCAAACCAGCTATCGATCATCGCCTTGGTAGGCCTTTACCCCA 5582 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 |||||||||||||| || ||| || || | || | ||| | | ||| Sbjct 5583 CCAACTAGCTAATCGAACGCAGGTTCCTC------CACAGG---CGACTTACGC---CTT 5630 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA- 299 | ||| ||| ||||||||||||| | |||||| ||| |||||||| ||| Sbjct 5631 TGACCCTCAGGTATCATGCGGTATTAGCTCCAGTTTCCCGGAGTTGTCCCCCAC--CCAT 5688 Query 300 -GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 | |||| |||| || ||||||||||||||||| || Sbjct 5689 GGATAGATCCCTACGCGTTACTCACCCGTCCGCCACT 5725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071730477760