Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value SEQ14764 518 8e-145 SEQ17146 345 1e-92 >SEQ14764 Length=5928 Score = 518 bits (574), Expect = 8e-145 Identities = 373/417 (89%), Gaps = 10/417 (2%) Strand=Plus/Plus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || ||||||| ||||| || || ||||| ||||| ||| ||||||||||||||||||| Sbjct 2412 CCTATCCACAAGTCATCCC-CTGGCTTTT-CAACGACAGTGGGTTCGGTCCTCCAGTTAG 2469 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | ||||||||||||| |||||||| ||| ||||||||| |||||||| ||||||||| | Sbjct 2470 T-GTTACCCAACCTT-CAACCTGCTCAT-GGATAGATCACCCGGTTT-CGGGTCTATA-C 2524 Query 124 CCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAG 183 ||||| |||| |||||||| ||||||||| ||| | ||||| ||||||||| ||||||| Sbjct 2525 CCAGCAACTAAACGCCCTATTAAGACTCGATTT-CTCTACGGCTCCCCTATACGGTTAAC 2583 Query 184 CTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA 243 ||| || |||||| |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 2584 CTT-GCTACTGAATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCAAACAA 2642 Query 244 AGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303 || ||||||||||||||||| |||| |||||||||||||||||||||||||||| | || Sbjct 2643 -GTTGGCTCCCACTGCTTGTATGCATGCGGTTTCAGGATCTATTTCACTCCCCTCACAGG 2701 Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363 ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 2702 GGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAG 2761 Query 364 CCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||||||||||||||||||||||||||||||| ||||| ||||| || |||||||| Sbjct 2762 CCTTGGAGGATGGTCCCCCCATATTCAGACAAGGTTTCACGTGCCTCGCCCTACTCG 2818 >SEQ17146 Length=6450 Score = 345 bits (382), Expect = 1e-92 Identities = 335/416 (81%), Gaps = 20/416 (5%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 |||||| |||| || ||||||||||| | || ||||||| |||||||| || ||| Sbjct 2917 CCACAGCTCATCCCCG--ACTTTTTCAACAGGCGTGGGTTCGGCCCTCCAGTGCGT-GTT 2973 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| ||||| || |||| |||| || |||||| | |||||| ||||||| | | ||||| Sbjct 2974 ACCGCACCTT-CAGCCTGGCCAT-GGCTAGATCACTCGGTTT-CGGGTCT-TCTGCCAGC 3029 Query 129 GACT-AGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTT 186 ||| || ||||||| | ||||||||||| |||||||||| | |||| | ||||||| Sbjct 3030 AACTCAGTCGCCCTATTCAGACTCGCTTT-CGCTACGCCTACACCTAACGGCTTAAGCT- 3087 Query 187 TGCCACTGAAAATA---AGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA 243 | ||| ||| | | |||||||||||||||||||||||||||| ||||||| | || Sbjct 3088 ---CGCTGCAAACAGAAACTCGCTGACCCATTATACAAAAGGTACGCCGTCACCCCATAA 3144 Query 244 AGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303 |||||| |||||||||| || | |||||||||| ||| |||||||||||| ||| Sbjct 3145 GA--GGCTCCGACTGCTTGTAGGCGTCCGGTTTCAGG-TCTCTTTCACTCCCCTTATCGG 3201 Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363 ||| |||||| |||||||||||||||||| |||| |||||||||| | || ||||||||| Sbjct 3202 GGTGCTTTTCACCTTTCCCTCACGGTACTTGTTCGCTATCGGTCACTAAGGAGTATTTAG 3261 Query 364 CCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 |||||||| |||||||||||| |||||||| ||||| ||||| ||| ||||||| Sbjct 3262 GCTTGGAGGGTGGTCCCCCCATGTTCAGACAGGGTTTCACGTGCCCCGCCCTACTC 3317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241287836928