Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value SEQ14764 354 2e-95 SEQ17146 297 5e-78 >SEQ14764 Length=5928 Score = 354 bits (392), Expect = 2e-95 Identities = 333/419 (79%), Gaps = 14/419 (3%) Strand=Plus/Plus Query 1 GTACTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCC 60 || |||||||||| ||||||||||||| |||||||||||||||| |||||| || | || Sbjct 4900 GTGCTTTACAACCATAAGGCCTTCTTCACACACGCGGCATGGCTGGATCAGGGTTCCCCC 4959 Query 61 CATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 120 |||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 4960 CATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCA 5019 Query 121 GTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCC 180 ||||||| | ||||||||||||||| |||| ||||||||||| ||| |||| ||||||| Sbjct 5020 GTGTGGCGGATCATCCTCTCAGACCCGCTACAGATCGTCGCCTTGGTAGGCCTTTACCCC 5079 Query 181 GCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAA--GGTCCCCCT 238 ||||||||||||||| | | || ||||| ||| | ||| | || | ||||| Sbjct 5080 ACCAACTAGCTAATCCGACTTAGGCTCATCTATTAGCGCAAGGTCACAAGTGATCCCCTG 5139 Query 239 CTTT-GGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCA 297 |||| | | |||| |||||||||||||| || |||| || ||| |||||| | Sbjct 5140 CTTTCTCCCGTAGGACG-TATGCGGTATTAGCATCCCTTTCGAGATGTTGTCCCCCATTA 5198 Query 298 TCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACT-CGTCAGCGA-AGCAGCAAGC 355 |||||| |||| | |||||||||||||||||| || |||| | | ||||| | Sbjct 5199 ATAGGCAGATTCCTAAGTATTACTCACCCGTCCGCCGCTAGGTCAATTACCGAAGCAATC 5258 Query 356 TGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | | ||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 5259 TCC--------CCCGCTCGACTTGCATGTGTTAAGCCTGCCGCCAGCGTTCAATCTGAG 5309 >SEQ17146 Length=6450 Score = 297 bits (328), Expect = 5e-78 Identities = 313/414 (76%), Gaps = 30/414 (7%) Strand=Plus/Plus Query 1 GTACTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCC 60 || |||||||| |||||| ||||||||| ||||||||||| |||| ||||||||| |||| Sbjct 5402 GTGCTTTACAATCCGAAGACCTTCTTCACACACGCGGCATTGCTGGATCAGGCTTTCGCC 5461 Query 61 CATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 120 |||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 5462 CATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCA 5521 Query 121 GTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCC 180 ||||||||| ||||||||||| |||||||| |||| |||||| ||| |||| ||||||| Sbjct 5522 GTGTGGCTGATCATCCTCTCAAACCAGCTATCGATCATCGCCTTGGTAGGCCTTTACCCC 5581 Query 181 GCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCT 240 |||||||||||||| | ||||| ||| | ||| ||| | | || Sbjct 5582 ACCAACTAGCTAATCGAACGCAGGTTCCTCC-------ACAGG--CGACTTACGC---CT 5629 Query 241 TTGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCA 300 ||| | | | | ||||||||||||| | |||||| | ||| |||||| || Sbjct 5630 TTGACCCTCAGGTATCATGCGGTATTAGCTCCAGTTTCCCGGAGTTGTCCCCCACCCATG 5689 Query 301 GGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTT 360 | || | || | | |||||||||||||||||||| || | | ||| | Sbjct 5690 GATAGATCCCTACGCGTTACTCACCCGTCCGCCACTAATC-------CCGAAAGAT---- 5738 Query 361 CCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||| |||||||||||||||| || |||||||||||||| |||||| Sbjct 5739 -------CCGTGCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCGCTCTGAG 5785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222092664192