Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value SEQ17146 365 1e-98 SEQ14764 327 3e-87 >SEQ17146 Length=6450 Score = 365 bits (404), Expect = 1e-98 Identities = 324/401 (81%), Gaps = 3/401 (1%) Strand=Plus/Minus Query 9 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 68 || |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 5369 GAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTG 5310 Query 69 TCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCT 128 |||||| ||||||||||||||| ||||||| |||| | ||||||| |||||| | Sbjct 5309 CTCGGAATGACTGGGCGTAAAGGGCGCGTAGGCGGTTGATGCAGTCAGATGTGAAATCCC 5250 Query 129 ATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGG-CTAGAGTGCAGGAGGGGCAAGT 187 |||| |||| || ||||| ||||| || ||| | ||||||| | ||| || || Sbjct 5249 CGGGCTTAACCTGGGAACTGCATTTGAGAC-GCATTGACTAGAGTTCGAGAGAGGGTTGT 5191 Query 188 GGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGC 247 |||||||| ||||||| |||||||| |||||||||| ||| ||||||| ||||||||||| Sbjct 5190 GGAATTCCCAGTGTAGAGGTGAAATTCGTAGATATTGGGAAGAACACCGGTGGCGAAGGC 5131 Query 248 GGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGA 307 ||| |||| | |||||| ||||||| ||||||||||||||||||||||||||||| Sbjct 5130 GGCAACCTGGCTCGATACTGACGCTGAGGCGCGAAAGCGTGGGGAGCAAACAGGATTAGA 5071 Query 308 TACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCC 367 |||||||||||||||||| |||||||||| | || | ||| ||| | || | || | Sbjct 5070 TACCCTGGTAGTCCACGCTGTAAACGATGTGTGCTGGATGTTGGGTAACTTAGTTACT-C 5012 Query 368 GGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||| || ||| ||||| |||| | || ||||||||||| Sbjct 5011 AGTGTCGAAGCTAACGCGCTAAGCACACCGCCTGGGGAGTA 4971 >SEQ14764 Length=5928 Score = 327 bits (362), Expect = 3e-87 Identities = 311/396 (79%), Gaps = 1/396 (0%) Strand=Plus/Minus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| |||||||||| |||||||||||||||||||||| |||| || ||||||| || Sbjct 4837 AAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGCGAGCGTTAATCG 4778 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 || ||||||||||||||| ||||||||| || || ||||||| || |||||| | | Sbjct 4777 GATTTACTGGGCGTAAAGCGTGCGTAGGCGGCTTTTTAAGTCGGATGTGAAATCCCCGAG 4718 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192 || ||| || | ||| || || |||| |||||||| |||| || || |||| Sbjct 4717 CTTAACTTGGGAATTGCATTCGATACTGGGAAGCTAGAGTATGGGAGAGGATGGTAGAAT 4658 Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252 ||| |||||||||||||||||||||| || ||||||| ||| |||||||||| || Sbjct 4657 TCCAGGTGTAGCGGTGAAATGCGTAGAGATCTGGAGGAATACCGATGGCGAAGGCAGCCA 4598 Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312 |||| || |||||| |||||| ||||||| |||||||||||||||||||||||||| Sbjct 4597 TCTGGCCTAATACTGACGCTGAGGTACGAAAGCATGGGGAGCAAACAGGATTAGATACCC 4538 Query 313 TGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGTGC 372 |||||||||| ||||||||||||| |||||| || |||| | || || ||| Sbjct 4537 TGGTAGTCCATGCCGTAAACGATGTCTACTAGCCGTTGGGGTCTTTGAG-ACTTTAGTGG 4479 Query 373 CGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 |||||| ||||| ||||||| || ||||||||||| Sbjct 4478 CGCAGCTAACGCGATAAGTAGACCGCCTGGGGAGTA 4443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202897491456