Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28]
25,142 sequences; 621,706,043 total letters
Query= NC_032455.1
Length=2328
Score E
Sequences producing significant alignments: (Bits) Value
seq5981 131 2e-27
seq7405 122 1e-24
SEQ23903 78.8 1e-11
seq286 78.8 1e-11
>seq5981
Length=36389
Score = 131 bits (144), Expect = 2e-27
Identities = 335/501 (67%), Gaps = 8/501 (2%)
Strand=Plus/Plus
Query 1042 TTTACTAAGTTGGAAAAATATAGCACAAGCAAGTACAAAGCTCCAAGACTCATACAAGCA 1101
||||| ||| | |||||| | |||||||||||||||||||| | || || ||||||
Sbjct 27861 TTTACAAAGCTCGAAAAAATGGGAACAAGCAAGTACAAAGCTCCTCGCCTTATCCAAGCA 27920
Query 1102 AGAGATCCATCCTTCAATCTTGAGTACGGTCGATACATTAAACCAATTGAAAGAGCCCTT 1161
|| ||||| | || || | | || || |||||| || ||| | || || ||||
Sbjct 27921 AGGCATCCAACGTTTAACTTGGCTTATGGCGTATACATCAAGCCACTCGAGCGAAACCTT 27980
Query 1162 AAAACAAACGTACACTTCGGCAAAGGAACATACGACATCTGCGGCGCAAAAATTGAAAGA 1221
|| | || ||||||||||| ||||| ||||| ||| |||| | || |
Sbjct 27981 AAGCTCGATGTCCACTTCGGCAAGGGAACTTACGATGAAATTGGCAGAAAAGTCGACATC 28040
Query 1222 CTCCGTAGCAAATGGCGCTGGTACACTGAGTGCGACCATTCCACCTTTGATGCACACGTC 1281
|| | || | || | | || || || | |||||| ||||||||||||||||||
Sbjct 28041 CTATGCAGGAGATATAGATACTATACGGAAGGAGACCATAGTACCTTTGATGCACACGTC 28100
Query 1282 ACGGTCGAAATGCTCAAGCTATGCCACCAGTTTTATCGAAAATGC--CAAGGACACAATC 1339
|| || || ||||||| | ||||||||| |||||| | ||| | || | | | |
Sbjct 28101 ACTGTTGACATGCTCAGGTTATGCCACCGATTTTATGCACGCTGCTACCAGCAAAGCAGC 28160
Query 1340 CGTATATGGAATCCCTGGCGCGCAGAACCATTCACAACAAGGGTACGA-CGCGCTACGGT 1398
| || |||| | | || || || ||| ||| | | ||| | ||| | ||
Sbjct 28161 GATTTACGGAAGCTGT-GCAAAAAG-ACGATTAGAAACGTTGCT-CGATCCCGCAATGGA 28217
Query 1399 GAGCGCTACAAAGTCACTGGGACACGGATGTCTGGCGATGTTGACACTAGTTTGGGAAAC 1458
|| | |||| || || || || ||||| || || ||||| || | | ||||||
Sbjct 28218 GAAAGTTACAGCGTACGAGGAACCCGAATGTCAGGGGACGTTGATACCGGCCTTGGAAAC 28277
Query 1459 AGTCTCATCAATTACCACATACTTATACACGCTCT-TAGACTCATCGGTATACGAGGGGA 1517
|| |||||||| || | || || | ||| | | | | | ||||||||||||| ||
Sbjct 28278 AGCCTCATCAACTATTATATCCTCAGGCACTCGATACATAAGC-TCGGTATACGAGGAGA 28336
Query 1518 TGCCATTGTCAATGGAGACGA 1538
|||||| ||||| ||||||||
Sbjct 28337 TGCCATCGTCAACGGAGACGA 28357
>seq7405
Length=62349
Score = 122 bits (134), Expect = 1e-24
Identities = 333/501 (66%), Gaps = 8/501 (2%)
Strand=Plus/Minus
Query 1042 TTTACTAAGTTGGAAAAATATAGCACAAGCAAGTACAAAGCTCCAAGACTCATACAAGCA 1101
||||| ||| | |||||| | |||||||||||||||||||| | || || ||||||
Sbjct 44311 TTTACAAAGCTCGAAAAAATGGGAACAAGCAAGTACAAAGCTCCTCGCCTTATCCAAGCA 44252
Query 1102 AGAGATCCATCCTTCAATCTTGAGTACGGTCGATACATTAAACCAATTGAAAGAGCCCTT 1161
|| ||||| | || || | | || || |||||| || ||| | || || ||||
Sbjct 44251 AGGCATCCAACGTTTAACTTGGCTTATGGCGTATACATCAAGCCACTCGAGCGAAACCTT 44192
Query 1162 AAAACAAACGTACACTTCGGCAAAGGAACATACGACATCTGCGGCGCAAAAATTGAAAGA 1221
|| | || |||||||| || ||||| ||||| ||| |||| | || |
Sbjct 44191 AAGCTCGATGTCCACTTCGGTAAGGGAACTTACGATGAAATTGGCAGAAAAGTCGACATT 44132
Query 1222 CTCCGTAGCAAATGGCGCTGGTACACTGAGTGCGACCATTCCACCTTTGATGCACACGTC 1281
|| | || | || | | || || || | |||||| ||||||||||||||||||
Sbjct 44131 CTATGCAGGAGATATAGATACTATACGGAAGGAGACCATAGTACCTTTGATGCACACGTC 44072
Query 1282 ACGGTCGAAATGCTCAAGCTATGCCACCAGTTTTATCGAAAATGC--CAAGGACACAATC 1339
|| || || ||||||| | ||||||||| |||||| | ||| | || | | | |
Sbjct 44071 ACTGTTGACATGCTCAGGTTATGCCACCGATTTTATGAACGCTGCTACCAGCAAAGCAGC 44012
Query 1340 CGTATATGGAATCCCTGGCGCGCAGAACCATTCACAACAAGGGTACGA-CGCGCTACGGT 1398
| || |||| | | || || || ||| ||| | | ||| | ||| | ||
Sbjct 44011 GATTTACGGAAGCTGT-GCAAAAAG-ACGATTAGAAACGTTGCT-CGATCCCGCAATGGA 43955
Query 1399 GAGCGCTACAAAGTCACTGGGACACGGATGTCTGGCGATGTTGACACTAGTTTGGGAAAC 1458
|| | |||| || || || || ||||| || || ||||| || | | ||||||
Sbjct 43954 GAAAGTTACAGCGTACGAGGAACCCGAATGTCAGGGGACGTTGATACCGGCCTTGGAAAC 43895
Query 1459 AGTCTCATCAATTACCACATACTTATACACGCTCT-TAGACTCATCGGTATACGAGGGGA 1517
|| |||||||| || | || || | ||| | | | | | ||||||||||||| |
Sbjct 43894 AGCCTCATCAACTATTATATCCTCAGGCACTCGATACATAAGC-TCGGTATACGAGGAAA 43836
Query 1518 TGCCATTGTCAATGGAGACGA 1538
|||||| ||||| ||||||||
Sbjct 43835 TGCCATCGTCAACGGAGACGA 43815
>SEQ23903
Length=414249
Score = 78.8 bits (86), Expect = 1e-11
Identities = 112/158 (71%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 1066 ACAAGCAAGTACAAAGCTCCAAGACTCATACAAGCAAGAGATCCATCCTTCAATCTTGAG 1125
|||||||||||||||||||||||||| |||||||| || | ||| | || || || |
Sbjct 17979 ACAAGCAAGTACAAAGCTCCAAGACTTATACAAGCTAGGCACCCAACATTTAACCTGGCT 17920
Query 1126 TACGGTCGATACATTAAACCAATTGAAAGAGCCCTTAAAACAAACGTACACTTCGGCAAA 1185
|| || | || || |||||| | || || ||||||| || | | ||||||||
Sbjct 17919 TATGGACATTATATCAAACCACTCGAGCGAAGCCTTAAATACGACTTCCGTATCGGCAAA 17860
Query 1186 GGAACATACGACATCTGCGGCGCAAAAATTGAAAGACT 1223
|| || || ||| || || ||| |||| |||||
Sbjct 17859 GGCACTTATGACGAGATTGGAGCCAAAGTTGACAGACT 17822
>seq286
Length=12123
Score = 78.8 bits (86), Expect = 1e-11
Identities = 112/158 (71%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 1066 ACAAGCAAGTACAAAGCTCCAAGACTCATACAAGCAAGAGATCCATCCTTCAATCTTGAG 1125
|||||||||||||||||||||||||| |||||||| || | ||| | || || || |
Sbjct 7646 ACAAGCAAGTACAAAGCTCCAAGACTTATACAAGCTAGGCACCCAACATTTAACCTGGCT 7705
Query 1126 TACGGTCGATACATTAAACCAATTGAAAGAGCCCTTAAAACAAACGTACACTTCGGCAAA 1185
|| || | || || |||||| | || || ||||||| || | | ||||||||
Sbjct 7706 TATGGACATTATATCAAACCACTCGAGCGAAGCCTTAAATACGACTTCCGTATCGGCAAA 7765
Query 1186 GGAACATACGACATCTGCGGCGCAAAAATTGAAAGACT 1223
|| || || ||| || || ||| |||| |||||
Sbjct 7766 GGCACTTATGACGAGATTGGAGCCAAAGTTGACAGACT 7803
Score = 78.8 bits (86), Expect = 1e-11
Identities = 112/158 (71%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 1066 ACAAGCAAGTACAAAGCTCCAAGACTCATACAAGCAAGAGATCCATCCTTCAATCTTGAG 1125
|||||||||||||||||||||||||| |||||||| || | ||| | || || || |
Sbjct 10859 ACAAGCAAGTACAAAGCTCCAAGACTTATACAAGCTAGGCACCCAACATTTAACCTGGCT 10800
Query 1126 TACGGTCGATACATTAAACCAATTGAAAGAGCCCTTAAAACAAACGTACACTTCGGCAAA 1185
|| || | || || |||||| | || || ||||||| || | | ||||||||
Sbjct 10799 TATGGACATTATATCAAACCACTCGAGCGAAGCCTTAAATACGACTTCCGTATCGGCAAA 10740
Query 1186 GGAACATACGACATCTGCGGCGCAAAAATTGAAAGACT 1223
|| || || ||| || || ||| |||| |||||
Sbjct 10739 GGCACTTATGACGAGATTGGAGCCAAAGTTGACAGACT 10702
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7338839024568
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |