Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= NC_032455.1 Length=2328 Score E Sequences producing significant alignments: (Bits) Value seq5981 131 2e-27 seq7405 122 1e-24 SEQ23903 78.8 1e-11 seq286 78.8 1e-11 >seq5981 Length=36389 Score = 131 bits (144), Expect = 2e-27 Identities = 335/501 (67%), Gaps = 8/501 (2%) Strand=Plus/Plus Query 1042 TTTACTAAGTTGGAAAAATATAGCACAAGCAAGTACAAAGCTCCAAGACTCATACAAGCA 1101 ||||| ||| | |||||| | |||||||||||||||||||| | || || |||||| Sbjct 27861 TTTACAAAGCTCGAAAAAATGGGAACAAGCAAGTACAAAGCTCCTCGCCTTATCCAAGCA 27920 Query 1102 AGAGATCCATCCTTCAATCTTGAGTACGGTCGATACATTAAACCAATTGAAAGAGCCCTT 1161 || ||||| | || || | | || || |||||| || ||| | || || |||| Sbjct 27921 AGGCATCCAACGTTTAACTTGGCTTATGGCGTATACATCAAGCCACTCGAGCGAAACCTT 27980 Query 1162 AAAACAAACGTACACTTCGGCAAAGGAACATACGACATCTGCGGCGCAAAAATTGAAAGA 1221 || | || ||||||||||| ||||| ||||| ||| |||| | || | Sbjct 27981 AAGCTCGATGTCCACTTCGGCAAGGGAACTTACGATGAAATTGGCAGAAAAGTCGACATC 28040 Query 1222 CTCCGTAGCAAATGGCGCTGGTACACTGAGTGCGACCATTCCACCTTTGATGCACACGTC 1281 || | || | || | | || || || | |||||| |||||||||||||||||| Sbjct 28041 CTATGCAGGAGATATAGATACTATACGGAAGGAGACCATAGTACCTTTGATGCACACGTC 28100 Query 1282 ACGGTCGAAATGCTCAAGCTATGCCACCAGTTTTATCGAAAATGC--CAAGGACACAATC 1339 || || || ||||||| | ||||||||| |||||| | ||| | || | | | | Sbjct 28101 ACTGTTGACATGCTCAGGTTATGCCACCGATTTTATGCACGCTGCTACCAGCAAAGCAGC 28160 Query 1340 CGTATATGGAATCCCTGGCGCGCAGAACCATTCACAACAAGGGTACGA-CGCGCTACGGT 1398 | || |||| | | || || || ||| ||| | | ||| | ||| | || Sbjct 28161 GATTTACGGAAGCTGT-GCAAAAAG-ACGATTAGAAACGTTGCT-CGATCCCGCAATGGA 28217 Query 1399 GAGCGCTACAAAGTCACTGGGACACGGATGTCTGGCGATGTTGACACTAGTTTGGGAAAC 1458 || | |||| || || || || ||||| || || ||||| || | | |||||| Sbjct 28218 GAAAGTTACAGCGTACGAGGAACCCGAATGTCAGGGGACGTTGATACCGGCCTTGGAAAC 28277 Query 1459 AGTCTCATCAATTACCACATACTTATACACGCTCT-TAGACTCATCGGTATACGAGGGGA 1517 || |||||||| || | || || | ||| | | | | | ||||||||||||| || Sbjct 28278 AGCCTCATCAACTATTATATCCTCAGGCACTCGATACATAAGC-TCGGTATACGAGGAGA 28336 Query 1518 TGCCATTGTCAATGGAGACGA 1538 |||||| ||||| |||||||| Sbjct 28337 TGCCATCGTCAACGGAGACGA 28357 >seq7405 Length=62349 Score = 122 bits (134), Expect = 1e-24 Identities = 333/501 (66%), Gaps = 8/501 (2%) Strand=Plus/Minus Query 1042 TTTACTAAGTTGGAAAAATATAGCACAAGCAAGTACAAAGCTCCAAGACTCATACAAGCA 1101 ||||| ||| | |||||| | |||||||||||||||||||| | || || |||||| Sbjct 44311 TTTACAAAGCTCGAAAAAATGGGAACAAGCAAGTACAAAGCTCCTCGCCTTATCCAAGCA 44252 Query 1102 AGAGATCCATCCTTCAATCTTGAGTACGGTCGATACATTAAACCAATTGAAAGAGCCCTT 1161 || ||||| | || || | | || || |||||| || ||| | || || |||| Sbjct 44251 AGGCATCCAACGTTTAACTTGGCTTATGGCGTATACATCAAGCCACTCGAGCGAAACCTT 44192 Query 1162 AAAACAAACGTACACTTCGGCAAAGGAACATACGACATCTGCGGCGCAAAAATTGAAAGA 1221 || | || |||||||| || ||||| ||||| ||| |||| | || | Sbjct 44191 AAGCTCGATGTCCACTTCGGTAAGGGAACTTACGATGAAATTGGCAGAAAAGTCGACATT 44132 Query 1222 CTCCGTAGCAAATGGCGCTGGTACACTGAGTGCGACCATTCCACCTTTGATGCACACGTC 1281 || | || | || | | || || || | |||||| |||||||||||||||||| Sbjct 44131 CTATGCAGGAGATATAGATACTATACGGAAGGAGACCATAGTACCTTTGATGCACACGTC 44072 Query 1282 ACGGTCGAAATGCTCAAGCTATGCCACCAGTTTTATCGAAAATGC--CAAGGACACAATC 1339 || || || ||||||| | ||||||||| |||||| | ||| | || | | | | Sbjct 44071 ACTGTTGACATGCTCAGGTTATGCCACCGATTTTATGAACGCTGCTACCAGCAAAGCAGC 44012 Query 1340 CGTATATGGAATCCCTGGCGCGCAGAACCATTCACAACAAGGGTACGA-CGCGCTACGGT 1398 | || |||| | | || || || ||| ||| | | ||| | ||| | || Sbjct 44011 GATTTACGGAAGCTGT-GCAAAAAG-ACGATTAGAAACGTTGCT-CGATCCCGCAATGGA 43955 Query 1399 GAGCGCTACAAAGTCACTGGGACACGGATGTCTGGCGATGTTGACACTAGTTTGGGAAAC 1458 || | |||| || || || || ||||| || || ||||| || | | |||||| Sbjct 43954 GAAAGTTACAGCGTACGAGGAACCCGAATGTCAGGGGACGTTGATACCGGCCTTGGAAAC 43895 Query 1459 AGTCTCATCAATTACCACATACTTATACACGCTCT-TAGACTCATCGGTATACGAGGGGA 1517 || |||||||| || | || || | ||| | | | | | ||||||||||||| | Sbjct 43894 AGCCTCATCAACTATTATATCCTCAGGCACTCGATACATAAGC-TCGGTATACGAGGAAA 43836 Query 1518 TGCCATTGTCAATGGAGACGA 1538 |||||| ||||| |||||||| Sbjct 43835 TGCCATCGTCAACGGAGACGA 43815 >SEQ23903 Length=414249 Score = 78.8 bits (86), Expect = 1e-11 Identities = 112/158 (71%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 1066 ACAAGCAAGTACAAAGCTCCAAGACTCATACAAGCAAGAGATCCATCCTTCAATCTTGAG 1125 |||||||||||||||||||||||||| |||||||| || | ||| | || || || | Sbjct 17979 ACAAGCAAGTACAAAGCTCCAAGACTTATACAAGCTAGGCACCCAACATTTAACCTGGCT 17920 Query 1126 TACGGTCGATACATTAAACCAATTGAAAGAGCCCTTAAAACAAACGTACACTTCGGCAAA 1185 || || | || || |||||| | || || ||||||| || | | |||||||| Sbjct 17919 TATGGACATTATATCAAACCACTCGAGCGAAGCCTTAAATACGACTTCCGTATCGGCAAA 17860 Query 1186 GGAACATACGACATCTGCGGCGCAAAAATTGAAAGACT 1223 || || || ||| || || ||| |||| ||||| Sbjct 17859 GGCACTTATGACGAGATTGGAGCCAAAGTTGACAGACT 17822 >seq286 Length=12123 Score = 78.8 bits (86), Expect = 1e-11 Identities = 112/158 (71%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 1066 ACAAGCAAGTACAAAGCTCCAAGACTCATACAAGCAAGAGATCCATCCTTCAATCTTGAG 1125 |||||||||||||||||||||||||| |||||||| || | ||| | || || || | Sbjct 7646 ACAAGCAAGTACAAAGCTCCAAGACTTATACAAGCTAGGCACCCAACATTTAACCTGGCT 7705 Query 1126 TACGGTCGATACATTAAACCAATTGAAAGAGCCCTTAAAACAAACGTACACTTCGGCAAA 1185 || || | || || |||||| | || || ||||||| || | | |||||||| Sbjct 7706 TATGGACATTATATCAAACCACTCGAGCGAAGCCTTAAATACGACTTCCGTATCGGCAAA 7765 Query 1186 GGAACATACGACATCTGCGGCGCAAAAATTGAAAGACT 1223 || || || ||| || || ||| |||| ||||| Sbjct 7766 GGCACTTATGACGAGATTGGAGCCAAAGTTGACAGACT 7803 Score = 78.8 bits (86), Expect = 1e-11 Identities = 112/158 (71%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 1066 ACAAGCAAGTACAAAGCTCCAAGACTCATACAAGCAAGAGATCCATCCTTCAATCTTGAG 1125 |||||||||||||||||||||||||| |||||||| || | ||| | || || || | Sbjct 10859 ACAAGCAAGTACAAAGCTCCAAGACTTATACAAGCTAGGCACCCAACATTTAACCTGGCT 10800 Query 1126 TACGGTCGATACATTAAACCAATTGAAAGAGCCCTTAAAACAAACGTACACTTCGGCAAA 1185 || || | || || |||||| | || || ||||||| || | | |||||||| Sbjct 10799 TATGGACATTATATCAAACCACTCGAGCGAAGCCTTAAATACGACTTCCGTATCGGCAAA 10740 Query 1186 GGAACATACGACATCTGCGGCGCAAAAATTGAAAGACT 1223 || || || ||| || || ||| |||| ||||| Sbjct 10739 GGCACTTATGACGAGATTGGAGCCAAAGTTGACAGACT 10702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7338839024568