Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= AAMG01001188.1 Length=621 Score E Sequences producing significant alignments: (Bits) Value seq181673 122 3e-25 >seq181673 Length=1196 Score = 122 bits (134), Expect = 3e-25 Identities = 178/244 (73%), Gaps = 7/244 (3%) Strand=Plus/Plus Query 1 TCGATCGCCTTTGGCACGGGAAGTGGCCTTGCTTTGGCTTTTCGAGGCGTTCGCCGAGAA 60 |||||| ||| | |||| || || || ||| || |||| || ||||| || ||| Sbjct 960 TCGATCTGCTTAG-CACGTGACGTTGC-TTGACGTGACTTT--GATGCGTTGGCACTGAA 1015 Query 61 ACGGCTTGACGAAGGATTTGCAGCTCGGTGATCTGCGCCTTCTTTCTTGGCGTTGTCCGA 120 ||||| |||||||||| | || ||| | || || || || |||||| ||||| || || Sbjct 1016 GCGGCTA-ACGAAGGATT-GTAGTTCGTTTATTTGTGCTTT-TTTCTTAGCGTTATCTGA 1072 Query 121 CAGCAGTTGCTCGCGGGACTGGGTCGCCACGGTCATGTACTCGTCGTAGTTGCCCGGGAA 180 ||| || ||| || | ||| || | ||||| |||||||||||||| ||||| | Sbjct 1073 CAGTAGACGCTTACGCGCTTGGAATGCTGCTGTCATATACTCGTCGTAGTTTCCCGGATA 1132 Query 181 CAGGCGCAGCTCGCCGTAGTCCAGGTCAGCCATGTGGGTACACACGCTGTTCAGGAAGTG 240 | |||||| || |||||||| || || ||||| || ||||| || |||||| |||||| Sbjct 1133 AATGCGCAGTTCACCGTAGTCGAGATCCGCCATATGCGTACAGACCATGTTCAAGAAGTG 1192 Query 241 ACGG 244 ||| Sbjct 1193 GCGG 1196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1878043343820