Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_007902.1 Length=52162 Score E Sequences producing significant alignments: (Bits) Value seq182837 414 3e-111 seq183244 163 9e-36 >seq182837 Length=2001 Score = 414 bits (458), Expect = 3e-111 Identities = 477/642 (74%), Gaps = 0/642 (0%) Strand=Plus/Minus Query 23512 ATAGTACAGCAAGCTGCGAAACTGCTCTTTGGGATACGCCCACTGTTCGAGCAATCCGGC 23571 ||| |||| ||| | |||| || |||||||| | |||||| || |||| | || Sbjct 873 ATAATACATCAACCCCTGAAATTGTTCTTTGGGTAGAGACCACTGCTCTAGCAGACACGC 814 Query 23572 CAGTTCGTTAACCAGCTCCAGCATATCACGGGTACGAATGTGCTTCTGCACCAGTTCCAG 23631 ||||| || || || ||||||||||||||| | ||||| ||||||||||||| || || Sbjct 813 TAGTTCATTCACTAGTTCCAGCATATCACGGCTGCGAATATGCTTCTGCACCAACTCTAG 754 Query 23632 CAGCGCCACCCGGCGATGGGTCAGGATTTCGTCATCCGGTATTGCAGTGATATCGACCAG 23691 || || || || |||||||| |||||| | ||||||| ||||| || ||||| ||||| Sbjct 753 TAGTGCGACGCGCCGATGGGTAAGGATTGCCTCATCCGCTATTGTCGTAATATCTACCAG 694 Query 23692 CGGAAATGCCTGATGATAAACCGTGGCCGCCAATTCTGGCTCAGCAAAACAGTCCAGACA 23751 ||||| || || ||| || | |||| ||| || || ||||||||||||| || Sbjct 693 TGGAAAGGCTTGCGTATAGACAGACTTTGCCAGTTCAGGTTCCGCAAAACAGTCCAACCA 634 Query 23752 GCGCGTGCTGTACGGATACGGCGACGTGGTGCCGTGGTAAAACAGCAGCGGAATGACCAC 23811 | |||||||| ||||| || ||||| ||||||||||| ||||||||||| || || || Sbjct 633 TTGGGTGCTGTAGGGATAGGGTGACGTAGTGCCGTGGTAGAACAGCAGCGGTATCACTAC 574 Query 23812 CGGTAGCTGATCGTTGCCCTGTTCTAGATGCCGCTGCATCGCGGCGACCGCATACCGTAG 23871 ||||| ||| || || || || |||||||| ||||||||||| || |||||||| || | Sbjct 573 CGGTAACTGGTCATTACCTTGCTCTAGATGGCGCTGCATCGCCGCCACCGCATAACGCAA 514 Query 23872 CAATCGAAACGCCATCAGCTTTTCCGGGCGGCTCTGGTGCTCTATCAGACAGTAGACGTA 23931 || ||||| |||||| |||| ||||| || ||||||||||| || ||||||||||| || Sbjct 513 TAAGCGAAATGCCATCCGCTTGTCCGGACGACTCTGGTGCTCAATGAGACAGTAGACATA 454 Query 23932 ACCATCATGGCCCGTCGTGGTCTTCATCGAGTAGAGCATATCCGAGCACTGGCCCTTCAG 23991 || ||| || | |||||| | ||| | | |||||||| ||||||||| || Sbjct 453 GCCCGGATGACCTGCCGTGGTTTGCATTGCACACAGCATATCGGAGCACTGGGTGCGTAG 394 Query 23992 GTCGTCTTCGATAAATGAGCCGGAAGCCATCGCCAATGTGCCGAAATCGCAGCGCTTACG 24051 ||| ||||||||||| ||| || | ||||||| |||| |||||| ||| ||| || Sbjct 393 GTCATCTTCGATAAAGCTGCCCGACGTTATCGCCAGCGTGCTGAAATCACAGTGCTGGCG 334 Query 24052 CAGGTGCGGCGGCAGATGGATTTCCAGAAAGTCCCGAGCGACCGCGATATCGCCAAGGAA 24111 ||| | | || | ||| ||||||| |||||| || | ||||| ||||| | | || Sbjct 333 CAGATATGCAGGTAAATGAATTTCCAAAAAGTCACGGACAACCGCAATATCACTGAAAAA 274 Query 24112 CTTTTTGAATACGTGGTCATGGTGCGACAGGGATTTCGTCAT 24153 || || || | | ||| || || || || || | ||||| Sbjct 273 TTTCTTAAAGAGGCTGTCGTGATGGGAAAGTGACATGGTCAT 232 >seq183244 Length=6589 Score = 163 bits (180), Expect = 9e-36 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 50257 AGTAGCACTTCGCTTCGGATGTGTTGAAGAAAAAGCATCTATCAATAAACCAAAGCGTCC 50316 |||||| || |||||||| || || ||||||| || ||| |||| ||||| ||||| || Sbjct 5755 AGTAGCCCTACGCTTCGGCTGCGTCGAAGAAACAGTATCCATCAGCAAACCCAAGCGCCC 5696 Query 50317 TCGTCTAGCCAAACGCCCACACGTAAAAACAGGATCACACGCTGAGGGTGAATGGATGCA 50376 |||||||| ||||| || ||||| | |||||||| ||||| |||||||||||||| Sbjct 5695 CCGTCTAGCTAAACGTCCGCACGTCACTGTCGGATCACAGGCTGAAGGTGAATGGATGCA 5636 Query 50377 GAAGAATACAGAAATACTTTACCAGTATGAAAAAGCGCTGAAAGGATACGATCCTACGCT 50436 ||| ||| ||||||| || || ||||||||| |||| |||| | |||||||||| | Sbjct 5635 GAACAATGCAGAAATGCTATATCAGTATGAACAAGCCTTGAAGGAATACGATCCTGACTT 5576 Query 50437 ACGTCTGGATATGCCCGATTTACGACGAGCAGTCGAGT 50474 | ||||||| | || || || || || || |||| Sbjct 5575 GAGATTGGATATTCAAGACTTGCGGCGTGCTGTAGAGT 5538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 166433745393960