Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_009552.2 Length=40863 Score E Sequences producing significant alignments: (Bits) Value seq183157 183 8e-42 >seq183157 Length=4427 Score = 183 bits (202), Expect = 8e-42 Identities = 513/782 (66%), Gaps = 4/782 (1%) Strand=Plus/Plus Query 37651 AATGAAACAATATTTAGACTTGCTGCAAGACATCTTAGAAAACGGCGTCGAAAAAGAAGA 37710 ||||||||| ||| | || || |||| | | | ||| | || | |||| | || Sbjct 2923 AATGAAACAGTATCTGGAATTAATGCAGTATGTTCTCGAACATGGTACAGCAAAAAATGA 2982 Query 37711 CCGAACGGGCGTCGGCACGCTGTCGGTGTTCGGCCGCCAGCTCCGCTTCAACTTACAAGA 37770 ||| || || | || || ||||| || || || | || | || || || |||| || Sbjct 2983 CCGCACTGGTATTGGGACTCTGTCTGTTTTTGGTCATCAAATGCGGTTTAATTTACGTGA 3042 Query 37771 TGGATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGCTCCATCATTTATGAACTGCT 37830 || |||||||| || || || ||||||| || | | |||||||||| ||||| || | Sbjct 3043 AGGCTTTCCGCTAGTAACCACCAAAAAATGCCACCTACCCTCCATCATTCATGAATTGTT 3102 Query 37831 TTGGTTTTTAAAAGGCGATACGAACGTCCGCTATTTGCAGGAGAATGGCGTGACGATTTG 37890 ||||| | | |||||||| || || ||| || | |||||| || | ||||| Sbjct 3103 ATGGTTCCTCACTGGCGATACTAATATCGCTTATCTGAAAGAGAATAAAGTTTCTATTTG 3162 Query 37891 GGATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGATTTACGGCGCGCAATGGCGCTC 37950 |||||| |||||| | ||||| || || ||||| || | || || ||||||||| Sbjct 3163 GGATGAATGGGCGAATGAAAATGGTGACCTCGGTCCAGTATATGGAAAACAATGGCGCAA 3222 Query 37951 GTGGAAGGGAGCAGACGGGAAAACCATCGACCAGAT-CGCATGGGTTGTCGAAGAGATCA 38009 |||| || ||||| || |||||| | ||| || | ||| || | | Sbjct 3223 CTGGATTACTGCTGACGGTCGCCAGATTGACCAGCTGAGCA-ATGTAATTGAAAAGCTAA 3281 Query 38010 AACGAAATCCGCATTCACGCCGGCTGCTGGTGAGCGCTTGGAATGTAGCAGAATTGGACG 38069 || || || ||||||| || | | | || ||||| || | |||||| || Sbjct 3282 AAAATAACCCAAATTCACGTCGTATTATTATCTCTGCGTGGAACGTTGGAGAATTAGATT 3341 Query 38070 AGATGAAGCTGCCGCCGTGTCATTACGCCTTTCAGTTCTATGTCGCCAACGGCCGGTTGT 38129 ||| ||||| || |||||| |||||||| |||| ||| | | ||| | | Sbjct 3342 TAATGGCACTGCCTCCTTGTCATGCTTTTTTTCAGTTTTATGCCGCAGATAGTCGGCTTT 3401 Query 38130 CATGCATGTGGCAGCAGCGCTCCGTTGATACGTTTTTAGGGTTGCCGTTTAACATCGCGA 38189 |||| | | ||||| ||| ||||| || | || |||| ||||| || || | Sbjct 3402 CATGTCAGCTATACCAGCGTTCCTGTGATATTTTCCTTGGCCTGCCATTTAATATTGCTA 3461 Query 38190 GCTACGCGCTGT-TGACGCATATGGTAGCCCAACAATGCGACTTGGATGTCGGTGAACTC 38248 | || ||| | || ||||||| |||| ||||| |||| | | || || || || | Sbjct 3462 GTTA-TAGCTTTCTGGTGCATATGATAGCGCAACAGTGCGGCCTAGAAGTAGGAGACTTT 3520 Query 38249 ATTTTCACCGGCGGCGACGTCCATTTGTACAAAAATCATCTGGAACAAGCGAAACTGCAG 38308 |||| | ||||| || | |||||||| | || || || ||||| || ||||| Sbjct 3521 ATTTGGATTGGCGGTGATATTCATTTGTATAGCAACCACCTTGAACAGGCACGTCTGCAA 3580 Query 38309 CTGACGCGCGAGCCGCGCCCGCTGCCGAAGCTTGTGCTGAAACGGAAGCCGCCGTCTATC 38368 || | ||| ||||| || ||||||| || ||| ||||||| || || ||||| Sbjct 3581 CTAATGCGTGAGCCACGTACGCTGCCACTACTGGTGATGAAACGTAAACCAGTATCTATT 3640 Query 38369 TTTGACTATGAATACGACGACTTTGAAATCGTCGGCTACGATCCGCATCCGGCGATTAAA 38428 || |||||| | ||| || || ||| || || ||||| || ||||| |||||| Sbjct 3641 TTCGACTATCGTTTCGATGATTTCACAATTCAGGGTTATGATCCCCACCCGGCAATTAAA 3700 Query 38429 GC 38430 || Sbjct 3701 GC 3702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130355645301750