Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq114852 536 1e-147 seq66438 336 2e-87 >seq114852 Length=3422 Score = 536 bits (594), Expect = 1e-147 Identities = 1249/1866 (67%), Gaps = 57/1866 (3%) Strand=Plus/Plus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || || || || || ||||| ||||| | ||||| | | ||| |||||||| || Sbjct 828 ATCAACTGTAAATTGTATAGCATTTGCAGCTGGTTTGGTACGTAAATAATACATGCCAGT 887 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGC-ATAATTCGGCT 65195 ||||| || || |||| || | || || || |||| ||| ||||| ||| || || | Sbjct 888 TTTGAGCCCCGCTTTCCAACCAAAAAAGTGTATAGATG-TAAGTTTGCCATAGTTTGGTT 946 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 | || ||||| ||||| ||||| || || ||||| || | |||||||| || |||| Sbjct 947 CAGCTACATGAATATTAAACGATTGGCTTTGATCAATAAATGCGCCACGATCGGCTGCCA 1006 Query 65256 TGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAA 65315 | | || || | ||||||||||||| || |||||||| || ||||| | Sbjct 1007 TCTTCATTGTAGTCTTTACCGATATCTCCCACACAGTCTTGTAAAGTTCACGTATTTTTT 1066 Query 65316 TTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCG 65375 || || ||||| | || | ||||||||||| | ||||| | | ||| Sbjct 1067 GCGGTATTGTTTCAATACCTTGTATTGAACCACGACTGGTTATAATTTTAGTTTTCATTT 1126 Query 65376 ACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGA 65435 || |||||||||||| ||| |||||| | | ||| ||| |||| | ||||| | Sbjct 1127 CATCATCCCACAAACCCAATTCGGTAAGATCGCGTAACAAATGATGATTAACAACTTGAA 1186 Query 65436 ACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAG 65495 | || || || ||||| ||||| ||| || || || || |||||||| |||||| Sbjct 1187 ATTCACCCGATAGTACGCGACGATTATAAATATTTGAAGTATAAGGTTCAAAAGATTCAT 1246 Query 65496 TGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTC 65555 ||||||| | |||||| ||||| |||||||| |||||||| || | | || ||||| | Sbjct 1247 TGTTGCCCATAATTTGAGCAGTTGATGCAGTAGGCATGGGTGCCAAAAGTAAGGAGTTGC 1306 Query 65556 GCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACA--TCGGTTTATC 65613 | | || | | | || || | |||| | ||||| ||| | |||||| | Sbjct 1307 GTACGCCATGCTGCTTTATTTTCTCTTTCAATACAGTCCAGTCCCATAGATCGGTTGGTT 1366 Query 65614 GTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAG 65673 | | ||||||||| | ||| || | || | || | ||||| || Sbjct 1367 TTTTATT--------CCACATATCATATTGGAGTATACCTTTGCTAACAGGTGAGCCTTC 1418 Query 65674 GAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAA 65733 | | | || || || | | | || | || ||| || | || | |||| || | Sbjct 1419 GTATGTTTCATAAGTACCATATTTTTCAGCCAATTCACAACTAGCTTCCAATGCGCCATA 1478 Query 65734 ATAAATGGTCTCGAAAATGCGTCGATTAA---GTTCACGTGCCTCATCGCTCTCGTACGG 65790 || || || |||||||| || |||| | || || |||| ||||||||||| || Sbjct 1479 GTACATTGTTTCGAAAATTTGTTGATTCAAGAGTGCA---GCCTGCTCGCTCTCGTATGG 1535 Query 65791 CATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATG 65850 || ||| |||| |||| || || | |||||| || |||||||||||||| ||||| Sbjct 1536 GTAACGCATAAGGATTAAAGCATCTGCAAAACCTTGTACGCCAATACCGATGGGGCGATG 1595 Query 65851 ACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATT 65910 | || || || | | || || | || || | ||| | |||||||| ||| Sbjct 1596 TCTGAAGTTTGATTTCTTTGTTTCGGGCAATGGATAATGATTCACTTCGATAATTTTATT 1655 Query 65911 CAAATTGCGTGTCACCA-CATGCACGATACGTCGC--AATTGTTCGAAATCAAAATGTTT 65967 | ||| || || || | || | || || || ||| |||||| | Sbjct 1656 TAGATTACGCGTTACGGTCTTG---GTAACTTCTTTTAAGCGTTTGAAATCG-------T 1705 Query 65968 AGGACGAT-CGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGC 66026 | ||| | |||| || |||||| | || |||| ||||| | || | Sbjct 1706 ATGACTTTTCGGGTGTA---------ACAAACATATTTAGCGCAATCGATGCTAAATTAC 1756 Query 66027 AGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGC 66086 | ||||||| || || || || | |||||| |||||||| ||||| | |||||| || Sbjct 1757 AAACAGCTACTTCATCCGGTGCTGAATACTCAACAATTTCTGTGCATAAATTACTACATT 1816 Query 66087 GTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGT 66146 |||||||| | ||| |||||||||||||| ||||| |||||||||||||||| ||||| Sbjct 1817 TAATGGTGCCAACATTTTGTTGATTACTCTTCCGATTACATGCATCCTTGTACAGCATGT 1876 Query 66147 ACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCA 66206 | || ||||||||||| ||||| || ||||| || || ||||||| |||| |||| Sbjct 1877 ATGGTGTGCCGGTCTCTACTTGCGATTCAATAATAGCAAACCAAAGACTTTGTGCTTTCA 1936 Query 66207 CCGTACG--TACCGCCCTACCT-TTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATT 66263 | || || ||| | ||| |||| || || | || | |||||||| | Sbjct 1937 CTGTCTTATTAGCGCG-TCCCTCTTGC--TCATATTTAGTATATAATTGTTCGAACTCAT 1993 Query 66264 CACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCAT 66323 |||||||||| || ||||| ||||||||||| || ||||||||||||||||| ||| Sbjct 1994 CACCCCATACCTCATGCAGACCAGGACACTTGTGAGGGCACATCAGCGACCAATCTTCAT 2053 Query 66324 CCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTG 66383 ||| ||||| |||||| ||||| |||||||| | || || || | ||| | | Sbjct 2054 TAGCTTCAACACGTTTCATAAAAAGATCTGGTATCCATAAAGCATAAAATAAATCTCTAG 2113 Query 66384 CTCGTTGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCA 66442 | || || || || |||| ||| ||||| || || | |||||||| | || ||| Sbjct 2114 CACGATGTTCTTCCTTGCCAGTG-TTTTTCTTTAAATCCAAAAACTCAAATACATCTGCA 2172 Query 66443 TGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACG 66502 ||||||||||| | ||||| || |||| ||| |||||| || || || || || || Sbjct 2173 TGCCATGGTTCTAAATAGATTGCAAACGCGCCAGGACGTTTACCACCGCCCTGATCTACA 2232 Query 66503 TAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTG 66562 || || || ||||| ||||| || | |||||| ||||| | || || ||| ||||||| Sbjct 2233 TAACGTGCCACATTATTGAATACTCTCAACATTGGTACCAAACCATTCGATGTGCCATTT 2292 Query 66563 GTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCG 66622 || ||| | || | | |||| || |||||| || ||||| || ||||||||||| Sbjct 2293 GTACCGGCAATTGCCGTGCCTCTAGCGCGTATACAATGTACATTGAGTCCAATACCACCA 2352 Query 66623 GCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCA 66682 || | || || || ||||| | ||| ||||||||| ||||| || || Sbjct 2353 GCTGATTTGGAAATTAATGCACATTGATGTGCTGAAGTGAATATGCCATCAATCGAATCG 2412 Query 66683 CCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAG 66742 | || |||| ||| |||| || ||||| || | ||| ||||| | ||| Sbjct 2413 GCGACCATTGTCAAGAGAAAGCAAGATGATAGTTGTGGCTGCCTTGTTGCGGCAGCGAAC 2472 Query 66743 AGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACA 66802 || || |||| ||| |||||||| ||| | || | ||||||| || |||||| | Sbjct 2473 AGTGTTGGTGAAGCATGCGTAAAATAACGTTCTGAAAGTAAATTGTATGTTTCGATGGCT 2532 Query 66803 GCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGT 66862 ||||| || | |||||||| || || | ||| ||||| | | | || || || Sbjct 2533 GCATCTATATCCTCGCCATGTATACCAATGGCAACACGCATTAACATATGCTGTGGACGC 2592 Query 66863 TCGACCA----GCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACC 66918 || || | ||| || || || || | |||||| || |||||||| || || | ||| Sbjct 2593 TCAACAATTTTGCC-AT--TTAATCTG-AGTAAGTAAGAACGTTCCAGCGTTTTAAAACC 2648 Query 66919 AAAGTA 66924 ||| || Sbjct 2649 AAAATA 2654 >seq66438 Length=2923 Score = 336 bits (372), Expect = 2e-87 Identities = 507/719 (71%), Gaps = 18/719 (3%) Strand=Plus/Minus Query 61106 AGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACT 61165 |||| ||||| ||||| ||||| || || ||||| ||| | |||||||||||| | || | Sbjct 1596 AGGCCGAAGCATCCTTTTGGACCGTAGAAGAGGTTGATCTCTCCAAAGACATGGACGATT 1537 Query 61166 GGGAGCGT-TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCC 61224 ||| ||| ||| ||| | ||||| |||||| | ||| || || || ||||| ||| Sbjct 1536 GGGTACGTCTTACCGA-CAATGAACGTCATTTCGTATCACACGTTTTAGCTTTCTTCGCC 1478 Query 61225 GCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTG 61284 || || || ||||| || ||||| ||| || | ||||||||| || || || ||| | Sbjct 1477 GCCTCCGATGGTATTGTTAATGAAAATCTAGTTGAACGTTTCAGTCAAGAAGTACAAATT 1418 Query 61285 TCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATG 61344 | || || ||||| || || ||||| || || || ||||| ||||| || || || ||| Sbjct 1417 ACCGAAGCACGTTGCTTTTATGGCTTTCAAATAGCAATGGAAAATGTGCATTCAGAAATG 1358 Query 61345 TACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAAT 61404 || || |||| || ||||| ||||| | ||| |||| | | || ||| Sbjct 1357 TATAGCATTCTTATTGATACCTACATTAAGGA-----TGGAA--------ANTATTTAAT 1311 Query 61405 GCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACC 61464 || || || ||||| || || || ||||| || || |||||||| | |||||| | Sbjct 1310 GCTATTGAAACGATCCCTGCCGTTAAGCGTAAGGCTGATTGGGCACTAGCATGGATCTCA 1251 Query 61465 AGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTT 61524 | | |||||| ||||||||||| | | |||||||| | || || || |||| Sbjct 1250 TCAAAAGCGGCTAATTTTGGTGAACGTGTCATTGCATTTGCTGCCGTTGAAGGCATATTC 1191 Query 61525 TTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTG 61584 || || || ||||| | |||||||||||||| |||||||| || |||||||| || Sbjct 1190 TTTAGCGGTAGTTTTGCTTCGATCTTTTGGTTGAAAAAACGTGGTCTAATGCCCGGCTTG 1131 Query 61585 ACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTG 61644 || ||| ||||||| | || || || || || || | ||||||||||||||| | || Sbjct 1130 ACATTCTCCAATGAGCTAATCTCGCGTGATGAAGGTTTACATTGTGATTTTGCTTGTCTG 1071 Query 61645 CTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGT 61704 | ||| ||| || |||| | ||| ||||||| | ||| || || | Sbjct 1070 ATGTTCCAAC---ATTTGGTACAGAAGCCGAGTAGGGAGCGTATTATTGAAATCATTGCT 1014 Query 61705 GAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGC 61764 |||||||| | || ||||| ||||| | || || |||||||| || | || ||| Sbjct 1013 GAGGCGGTTAAAATTGAACAAGAATTCTTAACAGATGCTTTGCCAGTGAATTTGATTGGC 954 Query 61765 ATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGA 61823 ||||||||| ||||||||| | |||||||||||||| || || || || ||||||| Sbjct 953 ATGAATTGTAAGCTAATGTCGGATTATATTGAATTTGTGGCGGATCGCTTGCTGGTCGA 895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396679869738800