Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq183214 197 4e-46 seq183032 167 7e-37 >seq183214 Length=5427 Score = 197 bits (218), Expect = 4e-46 Identities = 275/381 (72%), Gaps = 6/381 (2%) Strand=Plus/Plus Query 2514 TAACAAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTG 2573 ||| ||||| ||||| || | || ||||||||| ||| ||| || || || || | Sbjct 3051 TAAAAAATATCCAATTATTTCAATTGAAGATGGTTTGGCTGAAGGTGATTGAGAAGGATT 3110 Query 2574 GAAATCTCTTACT-GAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCG 2632 |||| | ||| | ||| | |||||| | ||| | |||||||| || || |||| Sbjct 3111 TAAAT-TATTATTAGAAAAATCAGAAGGTAAATTCCAAGTTGTTGGTGATGATTTATTCG 3169 Query 2633 TAACTAA--CACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCTGCTAACTCAATCCT 2690 | ||||| || ||| || || |||| ||| || ||| |||||| ||| | | Sbjct 3170 TTACTAATCCAAAAATTA--TTAAAGAAGGAATTATTAAAAACGTTGCTAATTCAGTATT 3227 Query 2691 TATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAA 2750 || ||| | || ||||| || || || ||||||||| | || ||||| |||||| | Sbjct 3228 AATTAAACTAAATCAAATTGGAACATTAACTGAAACTATGGAGGCTATTGAAATGTGTCA 3287 Query 2751 AGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAAT 2810 | ||||||| | |||||||||||||| || ||||| || |||||||||||| |||| || Sbjct 3288 AAAAGCTGGGTGAACAGCAGTAGTATCTCATCGTTCTGGGGAAACTGAAGATACAACGAT 3347 Query 2811 CGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTAC 2870 ||||| | ||||| || ||| |||| |||||||| ||||||||| ||||| | || Sbjct 3348 TGCTGACTTAGCAGTAGCTTTTAATACTGGACAAATTAAAACAGGTTCAATGTCAAGAAC 3407 Query 2871 TGACCGTATTGCTAAATACAA 2891 ||| ||| |||| ||||| || Sbjct 3408 TGATCGTGTTGCAAAATATAA 3428 >seq183032 Length=2929 Score = 167 bits (184), Expect = 7e-37 Identities = 290/419 (69%), Gaps = 2/419 (0%) Strand=Plus/Plus Query 2495 ACTACCTTGAAGAATTGGTTAACAAATACCCAATCATCACTATCGAAGATGGTATGGACG 2554 ||| | | |||||||| || | ||||| || | | |||||||||||| |||| | Sbjct 443 ACTTCTTGGAAGAATTAACCAAACACTACCCTATTGTTTCCATCGAAGATGGTCTGGATG 502 Query 2555 AAAACGACTGGGACGGTTGGAAATCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGG 2614 || || ||| |||| || || || || || || | |||| | || ||| Sbjct 503 AATCTGATTGGATTGGTTTTGCATATCAGACCAAAGTGCTGGGCGATAAAATACAGCTGG 562 Query 2615 TTGGTGACGACTTCTTCGTAACTAACACTGCTTACCTTG-AAAAAGGTATTGCAGAACAC 2673 | ||||| || || || || |||||||| | | ||| |||||||||| | | || | Sbjct 563 TGGGTGATGATTTATTTGTCACTAACAC-ACAAATTTTGAAAAAAGGTATCGAAAAAGGC 621 Query 2674 GCTGCTAACTCAATCCTTATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGAC 2733 ||||||||| | || |||||| | |||||||| || || | |||||||| || | | Sbjct 622 ATCGCTAACTCAGTTCTGATCAAACTCAACCAAATTGGCTCTCTAACTGAAACATTGGCC 681 Query 2734 GCTATCGAAATGGCGAAAGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAA 2793 || || | ||||| ||| | || || || || |||| || || || |||||||| ||| Sbjct 682 GCAATTAAGATGGCAAAAAATGCAGGTTATACTACAGTGGTCTCTCATCGTTCAGGAGAA 741 Query 2794 ACTGAAGATTCAACAATCGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACA 2853 || |||||| | || ||||||||| | ||||| | || || || || || || || Sbjct 742 ACGGAAGATGCGACCATCGCTGATTTAGCAGTAGGCACCGCAGCAGGCCAGATAAAAACC 801 Query 2854 GGTTCATTGTCACGTACTGACCGTATTGCTAAATACAACCAATTGCTTCGTATCGAAGA 2912 |||||| || || |||| ||| |||||||||| ||||| | | ||||| ||||| Sbjct 802 GGTTCAATGAGCCGCTCTGATCGTGTTGCTAAATATAACCAGCTCATCCGTATTGAAGA 860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155698762429980