Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_031120.1 Length=241147 Score E Sequences producing significant alignments: (Bits) Value seq183157 100 4e-16 seq183288 84.2 3e-11 >seq183157 Length=4427 Score = 100 bits (110), Expect = 4e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 196163 CAGATGCGCTTCGATCTGCAAGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTG 196222 || ||||| || || | | || || || ||||| || ||||| || ||| ||| || Sbjct 3020 CAAATGCGGTTTAATTTACGTGAAGGCTTTCCGCTAGTAACCACCAAAAAATGCCACCTA 3079 Query 196223 CGTTCCATCATTCATGAACTGCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTG 196282 | ||||||||||||||| || | |||||||||| || || || || ||| || ||| Sbjct 3080 CCCTCCATCATTCATGAATTGTTATGGTTCCTCACTGGCGATACTAATATCGCTTATCTG 3139 Query 196283 AATGACAACGGTGTCTCTATCTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCG 196342 || || || || ||||| ||| | || |||||||| ||| ||| |||| || || Sbjct 3140 AAAGAGAATAAAGTTTCTATTTGGGATGAATGGGCGAATGAAAATGGTGACCTCGGTCCA 3199 Query 196343 GTTTACGGTAAGCAGTGGCG 196362 || || || || || ||||| Sbjct 3200 GTATATGGAAAACAATGGCG 3219 >seq183288 Length=12247 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 4206 TGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCCTGC 4265 ||||||||||| |||||||||| ||||||||||||| |||||| | ||||||||||| | Sbjct 11950 TGTAGTTCAGTAGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 12009 Query 4266 CAGGGTCGCCA 4276 ||| | |||| Sbjct 12010 CAGAGGAGCCA 12020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 769774651697400