Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_031918.1 Length=45342 Score E Sequences producing significant alignments: (Bits) Value seq183115 196 1e-45 >seq183115 Length=3769 Score = 196 bits (216), Expect = 1e-45 Identities = 225/303 (74%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 33624 TTCTGTGGTGTATTTTTCAACTCCAGCATTATCAGTCCATTTTCTAGTGCGCAACTGACC 33683 ||| || || ||||||||||| || || | |||||||||||| | ||| ||| || Sbjct 2674 TTCAGTAGTATATTTTTCAACCCCTGCTTGATCAGTCCATTTACGAGTTTGCAGTGCGCC 2615 Query 33684 TTCAAAATAAACTTGTGAGCCTTTCCTAAGATACTCACCAGCAATTTCAGCGAGCTTGCC 33743 ||||| |||||| || |||||||| | ||||||||||||||||| |||||| |||||||| Sbjct 2614 TTCAATATAAACCTGAGAGCCTTTGCGAAGATACTCACCAGCAACTTCAGCCAGCTTGCC 2555 Query 33744 AAAGATAACTACGCGGTGCCATTCAGTTTGCTCCTTTTTCTCACCAGTAGCCTTATCATT 33803 ||| | ||| | |||||||| || || | ||| || | || ||||| ||| ||| Sbjct 2554 AAACAAAACAATACGGTGCCACTCGGTCTTCTCTTTAGTTTCCCCAGTTTGCTTGTCACG 2495 Query 33804 CCATGATTCCGATGTAGCAACAGATACGTTGGCAACAGCGCCGCCATTTGGCATGTATCG 33863 ||| ||| || ||||| | | | |||||||||||| |||||||| |||||||| || Sbjct 2494 CCAGCTTTCTGAAGTAGCCAGCGTGATGTTGGCAACAGCACCGCCATTCGGCATGTAGCG 2435 Query 33864 CACTTCTGGGTCCTGGCCTAATGTGCCGAGGATGATTACTTTATTTACGCCGCGAGTTGC 33923 ||||| ||||| || || | | || | | |||||||| |||| || | |||| Sbjct 2434 AACTTCCGGGTCTTGACCCAGATTTCCAACTAAAATTACTTTGTTTATACCTCTGCTTGC 2375 Query 33924 CAT 33926 ||| Sbjct 2374 CAT 2372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144657248126160