Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_032157.1 Length=1694 Score E Sequences producing significant alignments: (Bits) Value seq14811 244 1e-61 >seq14811 Length=2775 Score = 244 bits (270), Expect = 1e-61 Identities = 637/961 (66%), Gaps = 59/961 (6%) Strand=Plus/Plus Query 453 CAACACCTGTCTAAAACTAATTCCGAATTGAAGAATGATCCTCTTTATTTAGAAGCATTT 512 |||||||| ||||||||||| || || | || ||||||||| | ||| | || || || Sbjct 1347 CAACACCTCTCTAAAACTAACTCTGATCTTAAAAATGATCCTTTATATATGGAGGCTTTC 1406 Query 513 TTTCCATCACCTAGCGAAGAGCTAGTTCCGTTGCCTGAAGAGCTCAATCATTTTACGGGT 572 ||||| ||| || ||| |||||||| | |||| ||| | ||||||||| |||| Sbjct 1407 TTTCCTTCA------GAGGAGTTAGTTCCGATAGCTGAGGAGTTAAATCATTTTCCGGGA 1460 Query 573 TTTGACGGTTTAAGTTCAATAATTAATGAAAGTTATGATAATTTTTGTTCACATAGTTTA 632 ||||| || || | | || |||| ||| |||||||||| ||| ||| || Sbjct 1461 TTTGATGGATTGACTCCATTAATAAATTAAAGTTATGAAAATATTT------------TA 1508 Query 633 AATTTCAAGCGTTCTGTTTCATTATCTAGTTATGCCTATTATATTT--CTGTTTTCTGTT 690 ||||| || || || || | || || |||||| || | | | ||| | | Sbjct 1509 AATTTTAAACGGTCAATTCCGTTGTCG------GCCTATGGTAGTAAGCAGCTTTATCAT 1562 Query 691 GGGCCAGAGTTCTACATTTAAAACGTTTAAATAAATATCGCCTAACGACAAATGAGATTG 750 |||| | | |||| |||||| | | |||||||||| |||| ||| ||| || Sbjct 1563 GGGCACGTATATTACAATTAAAAAGATGAAATAAATATAAATTAACCACATTTGAACATG 1622 Query 751 AATTTGTCGATATGATTTACAATCAAGGAAATTACTTACTTCCAAAGTCTGTTACTCTTT 810 | || |||||||||| ||| | ||||| |||| | | |||||| | | || ||| Sbjct 1623 AGTTCATCGATATGATATACGAACAAGGTAATTTTGTTTTGCCAAAGATTATAACAATTT 1682 Query 811 ATCTTTCTGGCTTTGGTAATTTTACTATTCCATCAAGTGTTGAATCTAAGTTTAACACAA 870 | ||||| || || || ||||||| || ||||| || |||||| || || || |||| Sbjct 1683 ACCTTTCAGGATTCGGAAATTTTAACATCCCATCGGGTCCTGAATCAAAATTCAATACAA 1742 Query 871 AGCCGTATTCTTACGATGATGCCGGTTATTTTGTTAATTTTGCTGAAGAATTTTATACAG 930 | |||||| || ||||||| || |||||| |||| ||| |||||| | Sbjct 1743 AACCGTATGAATATGATGATGGTGGGTATTTTAAACGATTTGATGAGCTATTTTACTTAT 1802 Query 931 TAACGTCCTATCCTTGCATTTCTATATTTGCAGAAAGGATTATGAGAGACATGGCGTTTA 990 | || ||||| ||| ||||||||||||| | | ||| | || |||| | || Sbjct 1803 GCGCATCTTATCCCATCATACCTATATTTGCAGAGCGTGTCATGCGTGATCTGGCTTATA 1862 Query 991 CTGAGAATAATCGAGTCGGTGAAGCTTGGTCACCTAATGATATCGAGCAAGAATGGAACA 1050 | || || | | | || |||| | ||| || |||||| | || || || ||||||| Sbjct 1863 CAGATGATCACGAAATAGGCGAAGAATAGTCGCCAAATGATTTAGAACATGATTGGAACA 1922 Query 1051 CTCGGTGTCTAGGATATGCCCCATCCGTAGAATTGCCTTCATTACAGTTGCAAATA---C 1107 | || | | | || ||||| || || || || | || | | |||||| | Sbjct 1923 CGCGATTTATTGGTTATGCTCCTTCTGTTGACATCCC------AACGATGCAAAGAGGCG 1976 Query 1108 TGAATATG------GCGGGTATATCTTCTGAAAATTTTCCTTCGGATTGTGAAGGTTTAC 1161 || | | ||| || | ||| ||| || || |||| || ||||| | Sbjct 1977 TGCTTGAGCGGCGTTCGGTTACCGCGACTG---CTTTCCCCTCAGATTATG-AGGTTCTC 2032 Query 1162 TT-ATAAATATTAGATTGTTAAATTCTATTCAAAAATATTTACTTGAAATACCTAGCTTT 1220 || || ||| | | || | | | | |||||||| |||||| | ||||| || | ||| Sbjct 2033 TTAATCAATGTCCGTCTGATGAGTGCAATTCAAAAGTATTTATTAGAAATCCCAACTTTT 2092 Query 1221 GAATCAGGTCCTATTCCTGCTAATTTAACTGGCTCGTTAGGTCAGTTTGTTGTTGAAGAA 1280 || | |||||| | || || ||||||||||||| || ||||||||| || | |||| Sbjct 2093 GAGTTTGGTCCTGTGCCAGCAAATTTAACTGGCTGTTTGGGTCAGTTT-TTAATTCAGAA 2151 Query 1281 GTCGTTGAGAACGCAGTTGCCCTAGATGC-TATTG--ATAATATAGGCTCTGCTTCATTT 1337 || | || ||| || | | || | ||||| || | ||||| || ||| | || Sbjct 2152 TTC--TATTAATACAGCCGCTCAAAATACTTATTGAAATGAAATAGGTTC--CTTGACTT 2207 Query 1338 AT---TACTAAGTCCCCATTATCTTGTCCGGGCTCATTATCTTATCTTGGAGGAA-GTTT 1393 | | |||| ||||| ||| ||||||| || ||||| |||||| | ||||||| |||| Sbjct 2208 TTGTGTCCTAA-TCCCCTTTAGCTTGTCCTGGTTCATTGTCTTATTTAGGAGGAACGTTT 2266 Query 1394 T 1394 | Sbjct 2267 T 2267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5301654830200