Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_033195.1 Length=9266 Score E Sequences producing significant alignments: (Bits) Value seq93879 96.9 2e-16 >seq93879 Length=2141 Score = 96.9 bits (106), Expect = 2e-16 Identities = 172/246 (70%), Gaps = 5/246 (2%) Strand=Plus/Plus Query 3340 AAAACTTTACGTGAAAGTTTAGAGTGGTTTAATGGCCATTTGGTCATT-TGGTCTACTGA 3398 |||||| | ||||| | | || ||||||||||| |||| |||| ||| | ||| Sbjct 15 AAAACTATGCGTGAGAATAGTGAATGGTTTAATGGTACATTGG-CATTGTGGAGTGATGA 73 Query 3399 AACCATTGCAGTTGATGTTTATGTTAATTGTGGTGATGATTTTGAGTTAGGTGGATTTAT 3458 | || ||| | |||||||| || | ||||| || |||||| | || || || || ||||| Sbjct 74 ATCCTTTGAATTTGATGTTGATTTGAATTGCGGGGATGATATGGAATTGGGAGGTTTTAT 133 Query 3459 AGGTCACCCAGGTTTGGCTAACCCTTATTCTATGTTAGCATTACAGGATAATTGGAGAAC 3518 ||||| ||||| || || | || || ||| || | |||||||||| | Sbjct 134 GGGTCATCCAGGAGTGCAAAATCTATACTCGCAGTTTGCTATGGTGGATAATTGGCGGGT 193 Query 3519 ACAAGG-CTTG--GAGGATTTTCGGCTTAAAGAGCTAACCCAAACTGGGTGGAACTCTTT 3575 || || |||| ||||||| | ||| || ||||||||| |||||||||||| || Sbjct 194 GCAGGGACTTGACTTGGATTTTAAGTGTAAGGAACTAACCCAATATGGGTGGAACTCCTT 253 Query 3576 TAAGAA 3581 ||||| Sbjct 254 GAAGAA 259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 29475094737400