Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_033486.1 Length=1672 Score E Sequences producing significant alignments: (Bits) Value seq14811 349 4e-93 >seq14811 Length=2775 Score = 349 bits (386), Expect = 4e-93 Identities = 662/966 (69%), Gaps = 45/966 (5%) Strand=Plus/Plus Query 478 CAACATTTGTCAAAAACAAATTCTGAGTTTAAAAATGATCCTTTATATTTAGAAGCATTC 537 ||||| | || ||||| || ||||| |||||||||||||||||||| | || || ||| Sbjct 1347 CAACACCTCTCTAAAACTAACTCTGATCTTAAAAATGATCCTTTATATATGGAGGCTTTC 1406 Query 538 ATGCCTTCTCCTTCCGAGGAGTTGGTTCCAATAGCCGAAGAGTTAAATCATTTTCCGGGT 597 | |||||| |||||||| ||||| ||||| || |||||||||||||||||||| Sbjct 1407 TT------TCCTTCAGAGGAGTTAGTTCCGATAGCTGAGGAGTTAAATCATTTTCCGGGA 1460 Query 598 TTTGATGGTTTAACCACATTAATTGAAGAAACATATGAAAATTTTTCTGCACATAATTTA 657 |||||||| || || ||||||| | ||| ||||||||| ||| || Sbjct 1461 TTTGATGGATTGACTCCATTAATAAATTAAAGTTATGAAAATATTT------------TA 1508 Query 658 AACTTTAAACGTTCTGTATCTTTATCTGCTTATTCTTATTATATTACTGTTTTGTCTTGG 717 || |||||||| || | | || || || ||| | | | | | ||| || ||| Sbjct 1509 AATTTTAAACGGTCAATTCCGTTGTCGGCCTATGGTAGTAAG----CAGCTTTATCATGG 1564 Query 718 GCCCGTGTTTTATATTTGAAGAAAATGAA-TAAATATAAATTAACTACTAACGAATTGGA 776 || ||| | ||| | || || || ||||| ||||||||||||||| || ||| || Sbjct 1565 GCACGTATATTACAATTAAA-AAGATGAAATAAATATAAATTAACCACATTTGAACATGA 1623 Query 777 GTTTATTGAAATGGTTTATGAACAAGGCAATTTCTTATTACCTAAGAGTGTAATAATTTA 836 ||| || || ||| | || |||||||| ||||| | || || |||| | ||| |||||| Sbjct 1624 GTTCATCGATATGATATACGAACAAGGTAATTTTGTTTTGCCAAAGATTATAACAATTTA 1683 Query 837 TCTTTCTGGTTTTGGTAATTTTAACATCCCTTCAGGCGTTGAATCAAAATTTAATTTAAA 896 ||||| || || || |||||||||||||| || || |||||||||||| ||| ||| Sbjct 1684 CCTTTCAGGATTCGGAAATTTTAACATCCCATCGGGTCCTGAATCAAAATTCAATACAAA 1743 Query 897 ACCATATACTTATGACGAATTAGGATATTTTGTAGACTTTGACACGAAATTTTATTTATG 956 ||| ||| ||||| || || |||||| | ||||| | |||||| ||||| Sbjct 1744 ACCGTATGAATATGATGATGGTGGGTATTTTAAACGATTTGATGAGCTATTTTACTTATG 1803 Query 957 CACAAGTTATCCTAATATTTCTATTGCTGCTGAACGTGTAATGCGCGATTTAGCATACAC 1016 | || |||||| | || |||| ||| || ||||| ||||| ||| | || || || Sbjct 1804 CGCATCTTATCCCATCATACCTATATTTGCAGAGCGTGTCATGCGTGATCTGGCTTATAC 1863 Query 1017 TGACAATCCTGAAATTGGTGAAGCTTGGTCACCAGCCGAAATTGAACAAGAGTGGAATAC 1076 || ||| ||||| || |||| | ||| ||| || | ||||| || ||||| || Sbjct 1864 AGATGATCACGAAATAGGCGAAGAATAGTCGCCAAATGATTTAGAACATGATTGGAACAC 1923 Query 1077 TCGCTGTATTGGTTACGCACCTTCCGTTATAATTCATGATATGCAACGTGCCGTATTAGA 1136 || | ||||||||| || ||||| ||| || | |||||| | | ||| | || Sbjct 1924 GCGATTTATTGGTTATGCTCCTTCTGTTGACATCCCAACGATGCAAAGAGGCGTGCTTGA 1983 Query 1137 ACGTGCGCTC-GTTCGCTCTGATAATTTTCCTTCTGATTTAAATGGTTTTCTT-GTTAAT 1194 || ||| || ||| | | | ||| || || || ||| |||| |||| | ||| Sbjct 1984 GCG-GCGTTCGGTTACCGCGACTGCTTTCCCCTCAGA-TTATGAGGTTCTCTTAATCAAT 2041 Query 1195 GTTAGATTAATGAATAATATTCAAAAATATTTGTCCGAAATACCAAGCTTAGAGTCCGGT 1254 || | | |||| | |||||||| ||||| | ||||| |||| || |||| ||| Sbjct 2042 GTCCGTCTGATGAGTGCAATTCAAAAGTATTTATTAGAAATCCCAACTTTTGAGTTTGGT 2101 Query 1255 CCTATTCCTAAGAATCTAACTGGTTCTTTAGGTCAGTTTATCATTGA-AATTC------- 1306 ||| | || ||| ||||||| | ||| ||||||||| | ||| | ||||| Sbjct 2102 CCTGTGCCAGCAAATTTAACTGGCTGTTTGGGTCAGTTTTTAATTCAGAATTCTATTAAT 2161 Query 1307 -CAACTGTT----AGCGTTGGTGCTAACGATGAAATCGGGTCCCTTAGTTTTACTTCAAA 1361 || | | | | || || || ||||||| || ||| | | |||| || | Sbjct 2162 ACAGCCGCTCAAAATACTTATTG--AA--ATGAAATAGGTTCCTTGACTTTTGTGTCCTA 2217 Query 1362 ATCACCTTTGTCTTGTCCTGGTTCCATGTCTTTCCTAGGTGGTAGTTTCTTGTATCGTGT 1421 ||| ||||| ||||||||||||| |||||| |||| || | || |||||| | || Sbjct 2218 ATCCCCTTTAGCTTGTCCTGGTTCATTGTCTTATTTAGGAGGAACGTTTTTGTATAGAGT 2277 Query 1422 CGACAA 1427 ||||| Sbjct 2278 TGACAA 2283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5231391934860