Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq468 237 1e-57 seq453 237 1e-57 seq442 127 2e-24 >seq468 Length=1118636 Score = 237 bits (262), Expect = 1e-57 Identities = 539/805 (67%), Gaps = 13/805 (2%) Strand=Plus/Minus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 ||||| || | | |||||||||| |||||| || ||||||| || |||||| ||| Sbjct 1106892 GAACCATTACTTCGAGAGAATCCTAATCGTTTTGTTGTGTTCCCTATTGAGTATCCTGAT 1106833 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 |||||| ||||| || || || ||||| || |||||||| || || ||||| || || Sbjct 1106832 ATTTGGGAAATGTATAAGAAAGCTGAAGCCTCGTTCTGGACTGTTGAAGAGGTTGACTTA 1106773 Query 61147 TCCAAAGACATGAATGACTGGG---AGCGTTTATCGAGCGGTGAACAACATTTCATTAAA 61203 || ||| | | |||||||| ||| ||| ||| | |||| ||||| || | Sbjct 1106772 TCTCGAGATTTAACTGACTGGGCTAAGC--TTAACGAT-GAAGAACGTCATTTTATCAGC 1106716 Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 |||||||||| ||||| | || || |||||||| || ||||| |||||| ||| | Sbjct 1106715 TATGTGTTGGCATTCTTCTCTGCCTCAGACGGTATTGTAAATGAAAATTTAGCTGAAAGA 1106656 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 || | || | || | | || || || ||||| || || || || ||||| || Sbjct 1106655 TTTATTCGTGATATCCAGATTACCGAAGCTCGATGTTTTTATGGTTTTCAAATTGCGATT 1106596 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCG 61383 |||||||| ||||| ||||||||||| | || || || || |||||||| || | | Sbjct 1106595 GAGAATGTGCACTCTGAGATGTACAGCCTACTGATAGACACTTACATCAGTGATCCTGAC 1106536 Query 61384 GAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAA--GCGG 61441 | || || | ||||| || || || || | || ||| || ||| || | Sbjct 1106535 CAGCGGGAGTTTCTTTTCAAAGCTATTGAAACTGTCCC--ATGTGTTGCTCAAAAGGCTG 1106478 Query 61442 ATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCAT 61501 | ||||| | || |||| | | | || | | | |||| ||| ||||| | || | Sbjct 1106477 AATGGGCAATAAACTGGACTGCAAATCCATCAGTCTCTTTTGCCGAAAGATTGATTGCCT 1106418 Query 61502 TTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGA 61561 |||| || || ||| | |||||| || || || ||||| ||||||||| | || | Sbjct 1106417 TTGCATGTGTTGAAGGTATCTTTTTCTCAGGCTCTTTCGCCGCTATCTTTTGGCTTAAAA 1106358 Query 61562 AACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCA 61621 | ||||| || ||||| ||| | || ||| || || | || || || || || || Sbjct 1106357 AGCGTGGCCTGATGCCAGGTTTAACTTTCTCTAACGAACTTATCTCTCGAGATGAAGGAT 1106298 Query 61622 TGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGG 61681 | |||||||||||||| |||| |||| ||| ||| | || || | ||| || Sbjct 1106297 TACATTGTGATTTTGCCTGTTTGTTATTTAAA---TATGTTGTTAAAAGACCGAGTGAAA 1106241 Query 61682 AGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACG 61741 | | | || || || || || || || ||||| ||| ||||| | || || | Sbjct 1106240 AAATTATTCAAGAAATAGTGCGAGATGCTGTGGAAATCGAGCAGAAATTTTTAACCGAGG 1106181 Query 61742 CTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTG 61801 | ||||| || || ||||| || ||||| | | ||| | || || ||||| |||| Sbjct 1106180 CATTGCCAGTTTCTCTCATAGGAATGAACAACAAAATGATGGCCCAATACATTGAGTTTG 1106121 Query 61802 TTGCCGACCGTCTGTTGGTCGATTT 61826 |||| ||| | || |||| || || Sbjct 1106120 TTGCAGACAGATTGCTGGTTGAATT 1106096 >seq453 Length=2394413 Score = 237 bits (262), Expect = 1e-57 Identities = 539/805 (67%), Gaps = 13/805 (2%) Strand=Plus/Minus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 ||||| || | | |||||||||| |||||| || ||||||| || |||||| ||| Sbjct 12344 GAACCATTACTTCGAGAGAATCCTAATCGTTTTGTTGTGTTCCCTATTGAGTATCCTGAT 12285 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 |||||| ||||| || || || ||||| || |||||||| || || ||||| || || Sbjct 12284 ATTTGGGAAATGTATAAGAAAGCTGAAGCCTCGTTCTGGACTGTTGAAGAGGTTGACTTA 12225 Query 61147 TCCAAAGACATGAATGACTGGG---AGCGTTTATCGAGCGGTGAACAACATTTCATTAAA 61203 || ||| | | |||||||| ||| ||| ||| | |||| ||||| || | Sbjct 12224 TCTCGAGATTTAACTGACTGGGCTAAGC--TTAACGAT-GAAGAACGTCATTTTATCAGC 12168 Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 |||||||||| ||||| | || || |||||||| || ||||| |||||| ||| | Sbjct 12167 TATGTGTTGGCATTCTTCTCTGCCTCAGACGGTATTGTAAATGAAAATTTAGCTGAAAGA 12108 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 || | || | || | | || || || ||||| || || || || ||||| || Sbjct 12107 TTTATTCGTGATATCCAGATTACCGAAGCTCGATGTTTTTATGGTTTTCAAATTGCGATT 12048 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCG 61383 |||||||| ||||| ||||||||||| | || || || || |||||||| || | | Sbjct 12047 GAGAATGTGCACTCTGAGATGTACAGCCTACTGATAGACACTTACATCAGTGATCCTGAC 11988 Query 61384 GAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAA--GCGG 61441 | || || | ||||| || || || || | || ||| || ||| || | Sbjct 11987 CAGCGGGAGTTTCTTTTCAAAGCTATTGAAACTGTCCC--ATGTGTTGCTCAAAAGGCTG 11930 Query 61442 ATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCAT 61501 | ||||| | || |||| | | | || | | | |||| ||| ||||| | || | Sbjct 11929 AATGGGCAATAAACTGGACTGCAAATCCATCAGTCTCTTTTGCCGAAAGATTGATTGCCT 11870 Query 61502 TTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGA 61561 |||| || || ||| | |||||| || || || ||||| ||||||||| | || | Sbjct 11869 TTGCATGTGTTGAAGGTATCTTTTTCTCAGGCTCTTTCGCCGCTATCTTTTGGCTTAAAA 11810 Query 61562 AACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCA 61621 | ||||| || ||||| ||| | || ||| || || | || || || || || || Sbjct 11809 AGCGTGGCCTGATGCCAGGTTTAACTTTCTCTAACGAACTTATCTCTCGAGATGAAGGAT 11750 Query 61622 TGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGG 61681 | |||||||||||||| |||| |||| ||| ||| | || || | ||| || Sbjct 11749 TACATTGTGATTTTGCCTGTTTGTTATTTAAA---TATGTTGTTAAAAGACCGAGTGAAA 11693 Query 61682 AGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACG 61741 | | | || || || || || || || ||||| ||| ||||| | || || | Sbjct 11692 AAATTATTCAAGAAATAGTGCGAGATGCTGTGGAAATCGAGCAGAAATTTTTAACCGAGG 11633 Query 61742 CTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTG 61801 | ||||| || || ||||| || ||||| | | ||| | || || ||||| |||| Sbjct 11632 CATTGCCAGTTTCTCTCATAGGAATGAACAACAAAATGATGGCCCAATACATTGAGTTTG 11573 Query 61802 TTGCCGACCGTCTGTTGGTCGATTT 61826 |||| ||| | || |||| || || Sbjct 11572 TTGCAGACAGATTGCTGGTTGAATT 11548 >seq442 Length=7801961 Score = 127 bits (140), Expect = 2e-24 Identities = 597/931 (64%), Gaps = 29/931 (3%) Strand=Plus/Plus Query 66007 GGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTC 66066 ||| | ||| || || || || ||||| | || ||||| || |||| || |||||||| Sbjct 3252507 GGCTATAGAGGCAAGATTACAAACAGCAACTTCATCAGGGGCACTATATTCAACAATTTC 3252566 Query 66067 GGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCA 66126 ||||||||||| || ||||| || | ||| | ||||| ||| ||| || Sbjct 3252567 AGTGCACAGATTTGAACACTTGATGGTTCCAAGATTTTTCTGATTGGACTTTTCATTACA 3252626 Query 66127 TGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTG 66186 ||| || || | ||| |||||| || || || | |||| |||||||| || || Sbjct 3252627 ATGATCTTTATAAAGCATATACGGAACACCAGTTTCCATCTGGGCATCAATGATTGCTTG 3252686 Query 66187 CCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCG-TTCGTAATGTT--- 66242 ||||||||| || || || | | | | | || |||| ||| | || || Sbjct 3252687 CCAAAGAGCTCGAGCTTTTATT-TGCTGATTG---TATCTTTTTTCTTCTTCATATTTAA 3252742 Query 66243 CGTAGAGGTGTTCGAAGGATTCACC-CCATA--CTTCGGACAGACATGGACACTTGTGTG 66299 | || || | | ||| |||| | ||||| ||||| | |||| ||||| ||||||| Sbjct 3252743 CATAAAGCTTATTGAA---TTCATCTCCATAAACTTCGAATAGACCAGGACATTTGTGTG 3252799 Query 66300 GACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCC 66359 ||||||| || ||| |||| | || || || |||||| |||| ||| | || Sbjct 3252800 GACACATAAGACTCCACATTTCATCTTTTTTAACTCGCTCCATAAAAAGATTAGGCACCC 3252859 Query 66360 AGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTGATTTTTGCGCAAG 66418 | || || | || | ||| || |||| ||| || | || ||| ||||| | ||| Sbjct 3252860 AAAGAGCTAAAAACAAATCTCGAGCTCTCATCTCTTCTTTACCAGTG-TTTTTTCTTAAG 3252918 Query 66419 TCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATA 66478 ||||| ||||||| || |||||||| || || | || || || | | || Sbjct 3252919 CATAGGAAATCAAAGACATCAGCATGCCAAGGCTCAATATAAATAGCATAAGCTCCTGGT 3252978 Query 66479 CGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATT-GTTGAAGACACGCAACATCGG 66537 ||||| || ||||||| ||| || ||||| | ||| || || | || ||| || Sbjct 3252979 CGTTT---ACCCCCTTGGTTGACATAACGAGC-AGATTCATTAAACATTTTCAGCATAGG 3253034 Query 66538 TACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATC 66597 ||||| || | ||| ||||| || || ||| ||| |||| || || ||| Sbjct 3253035 CACGAGACCATCAGAGAAACCATTTGTCCCTCTGATTCGGGTTCCTTTCGCTCGAATACA 3253094 Query 66598 GTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGT 66657 |||||||| |||||||| ||||| || || || || | |||||| || || Sbjct 3253095 ATGAACATTGAGACCAATTCCACCAGCATATTTAGAAATCAAATTACAATCTTTCAAAGT 3253154 Query 66658 CCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTA---AG 66714 | |||| || ||||| || || | || | | || | | ||||| || Sbjct 3253155 ATCGGATATTCCTTCAATACTATCTTCCCTCATTGATAAAAGAAAAC---AACTAGATAG 3253211 Query 66715 TTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCG 66774 || ||| ||||| | || || ||||| || | ||| || ||||| | | | Sbjct 3253212 CTGAGGTCGAGGTGTACCAGCATTAAAAAGGGTAGGAGAAGCATGTGTAAACCATTTTTG 3253271 Query 66775 AGACATGTAATT-GTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTG 66833 |||||| ||||| ||| |||| | | | | ||||| | |||||||| || | | Sbjct 3253272 AGACAT-TAATTCGTAGGTCTGTAAGGCTGATTCAATATCAGATCCATGAATTCCAACAG 3253330 Query 66834 CACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGT 66893 || || ||| || | | ||| |||| ||| || | | | ||||| | | | || Sbjct 3253331 CAACTCTCATTAGCATATGTTGCGGCCTTTCAACTACTTTACCATTGATTTTAAGAAGGT 3253390 Query 66894 AGGAGCGTTCCAGGGTCTTGATACCAAAGTA 66924 | || | ||||| ||| |||| |||||| || Sbjct 3253391 ATGATCTTTCCAAGGTTTTGAAACCAAAATA 3253421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397564894124240