Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq450 149 9e-31 >seq450 Length=3639652 Score = 149 bits (164), Expect = 9e-31 Identities = 352/532 (66%), Gaps = 16/532 (3%) Strand=Plus/Plus Query 162310 CCAGATGAAATATATAACCTAGGGGCTCAGAGTCACGTTAAGGTTTCATTTGATCAGCCT 162369 || ||||||||||| || ||| ||||| || || || || |||||||| || | | | Sbjct 785288 CCTGATGAAATATACAATTTAGCAGCTCAAAGCCATGTCAAAGTTTCATTCGAGCTGAGT 785347 Query 162370 GAATACACAGCACAGACCGACGCATTGGGCACTCTAAGGGTGCTAGAAGCCGTCCGTCTT 162429 ||||| || ||| | || ||| | || ||| |||| || |||| || || | Sbjct 785348 GAATATACTGCAAATGTAGATGCAATTGGAACTTTAAGAGTATTAGATGCTATCAGAAGC 785407 Query 162430 CTTGGTATGGAATCATACGTAAGAATCTACCAAGCGAGCACCAGTGAGCTTTATGGGCTA 162489 ||| ||| | | | || | | | || ||||| || ||||| |||||||| | Sbjct 785408 TGTGGATTGGGAACCAAAGTTAAATTTTATCAAGCATCAACTAGTGAACTTTATGGTAAA 785467 Query 162490 GTTCAGGAGACACCCCAGAAAGAAACCACTCCAATGTATCCACGATCCCCTTATGGAGTT 162549 || || || | ||| || || |||| || || | |||||| |||| ||||| || ||| Sbjct 785468 GTCCAAGAAATACCACAAAATGAAAAAACACCTTTCTATCCAAGATCGCCTTACGGTGTT 785527 Query 162550 GCTAAACTATATGGGTTCTGGATCATCAAAAACTACAGGGAAAGCTATGACATACATGCC 162609 |||||| | ||||| | |||||| | ||||| | ||| || |||| ||| Sbjct 785528 GCTAAATTGTATGGTTACTGGATAGTTGTCAACTATCGTGAAGCATACAACATGTTTGCA 785587 Query 162610 TCTAGCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACACGC 162669 | |||||| |||| ||||| |||||| | | ||||| || || || || || || Sbjct 785588 GTCAATGGTATTTTATTTAATCATGAAAGCCCTAGAAGAGGTGAAACTTTTGTTACCCGT 785647 Query 162670 AAGATCGTCCGA-GCCTTGTCCCGAATT-------AGTGTGGGACTCCAAAGTGATCTAC 162721 || || || | ||| | || || | || ||||| || | Sbjct 785648 AAAATTACTAGAGGTGTTGCCAAGATTTCTATCGGTGAGTTGGACT--------ATATCG 785699 Query 162722 AACTTGGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTA 162781 |||| || ||| | | ||| | | |||||||| || || ||||| || || || |||| Sbjct 785700 AACTAGGTAACTTAGACGCCAAAAGAGACTGGGGTCATGCGAAAGATTATGTTGAAGCTA 785759 Query 162782 TGTGGTTGATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAACTGG 162833 ||||| | |||||||||||||| ||||| || |||| ||||| || ||||| Sbjct 785760 TGTGGCTCATGCTTCAGCAAGACAAGCCTGAAGATTTCGTGATAGCCACTGG 785811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691453659683160