Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq14288 462 7e-128 seq10190 462 7e-128 seq17054 147 7e-33 seq5679 113 1e-22 seq5070 109 2e-21 >seq14288 Length=1570 Score = 462 bits (512), Expect = 7e-128 Identities = 327/375 (87%), Gaps = 13/375 (3%) Strand=Plus/Minus Query 172 GTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG---- 227 ||||| ||| || | ||||||| |||| ||||| |||||||||||||| | | Sbjct 610 GTTCCACTTAATCAAGTAAGTAAGGAAACAATAAGAGTAGTGGTATTTCATTGTTGATAT 551 Query 228 ----CCGAA-----ACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCG 278 ||||| | ||||||||||| |||||||||| | ||| | ||| | | Sbjct 550 AAAACCGAAGTAATATATCTCCCACTTATGCTACACCTCTTATGTCTCCTTACACTGCCA 491 Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| Sbjct 490 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTAATTATTCCAAGCCCGTTCCCT 431 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 430 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAGGGAATCTCGTTAATCCATTCATG 371 Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCG 458 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 370 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCG 311 Query 459 CCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAAT 518 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 310 CCGTTTACCCGCGCTTACTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAAT 251 Query 519 CACATTGCGTCAACA 533 ||||||| ||||||| Sbjct 250 CACATTGTGTCAACA 236 >seq10190 Length=1621 Score = 462 bits (512), Expect = 7e-128 Identities = 327/375 (87%), Gaps = 13/375 (3%) Strand=Plus/Minus Query 172 GTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG---- 227 ||||| ||| || | ||||||| |||| ||||| |||||||||||||| | | Sbjct 1408 GTTCCACTTAATCAAGTAAGTAAGGAAACAATAAGAGTAGTGGTATTTCATTGTTGATAT 1349 Query 228 ----CCGAA-----ACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCG 278 ||||| | ||||||||||| |||||||||| | ||| | ||| | | Sbjct 1348 AAAACCGAAGTAATATATCTCCCACTTATGCTACACCTCTTATGTCTCCTTACACTGCCA 1289 Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| Sbjct 1288 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTAATTATTCCAAGCCCGTTCCCT 1229 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1228 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAGGGAATCTCGTTAATCCATTCATG 1169 Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCG 458 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1168 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCG 1109 Query 459 CCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAAT 518 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1108 CCGTTTACCCGCGCTTACTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAAT 1049 Query 519 CACATTGCGTCAACA 533 ||||||| ||||||| Sbjct 1048 CACATTGTGTCAACA 1034 >seq17054 Length=4548 Score = 147 bits (162), Expect = 7e-33 Identities = 92/98 (94%), Gaps = 1/98 (1%) Strand=Plus/Plus Query 436 TAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGA 495 ||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||| Sbjct 2231 TAAGAGAGTCATAGTTACTCCCGCCGTTT-CCCGCGAATACTTGAATTTCTTCACTTTGA 2289 Query 496 CATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||| ||||||| Sbjct 2290 CATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 2327 >seq5679 Length=1505 Score = 113 bits (124), Expect = 1e-22 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 ||||||||||||||| || |||||| |||||||||||||||||||||||||||||||| | Sbjct 1393 AGTAGATAGGGACAGAGGAAATCTCATTAATCCATTCATGCGCGTCACTAATTAGATGCC 1452 Query 419 GAGGCATTTGGC 430 |||||||||||| Sbjct 1453 GAGGCATTTGGC 1464 >seq5070 Length=1527 Score = 109 bits (120), Expect = 2e-21 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 ||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||| Sbjct 1416 AGTAGATAGGGACAGAGGGAATCTTGTTAATTCATTCATGCGCGTCACTAATTAGATGAC 1357 Query 419 GAGGCATTTGGCT 431 || | |||||||| Sbjct 1356 GATGTATTTGGCT 1344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634657669568