Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_007902.1 Length=52162 Score E Sequences producing significant alignments: (Bits) Value seq6474 123 8e-24 >seq6474 Length=5495 Score = 123 bits (136), Expect = 8e-24 Identities = 377/577 (65%), Gaps = 7/577 (1%) Strand=Plus/Plus Query 581 GCATAAGATTGGATCAAGGATAGTGCTCCAGAACTCAATGGCGTCGCGCTTGAAGTACCC 640 || ||| |||||| || | || ||| ||||| | || ||||| |||||||| ||||| Sbjct 4487 GCGTAATCTTGGATTAACGCTAATGCACCAGAGCATAACGGCGTTGCGCTTGATGTACCT 4546 Query 641 GAAAAATCCTTTGAATAATTACGATCATTTCCTGATAATTTTTGTAACGATCCATAACCT 700 | ||| ||| ||||| || | || || | |||||||||||| || |||||||| Sbjct 4547 GCGTAATTACGTGAGTAATTGCGGTTATCACCGGGTAATTTTTGTAAAGAACCATAACCC 4606 Query 701 GTAGTGACTACGCTCCAGTCTCCCCATGAGTTAAT-GAGTGAGCTTGAATGATTATAGTT 759 || ||| |||||||| |||||||| |||||||| || | | || || ||||| Sbjct 4607 GTCGTGGTAACGCTCCAATCTCCCCACGAGTTAATAAAGGCTACCTCTCTG-TTGTAGTT 4665 Query 760 TGAAAAACTGCATCGACTCCCATTATTATGGGCAGAAGCGCCGATAAGTGTGCTTCCATT 819 || ||| ||| | ||||| | | | |||| || | | | || || | Sbjct 4666 AGAGAAATACGCGCGAGTTCCATTTTGGTAATTACAAGCACCCACTAAAATACTGCCGCT 4725 Query 820 GTCGCCAAATTGATTCATATTATTTGAATCTACGCTAAGATCTAAACCACCGTTACCAGC 879 || || || | | ||| | | | ||| | |||||| || || || || || Sbjct 4726 ATCACCGAAATCTTCCATCACACCGGGCT---TGCTTAAATCTAACCCGCCATTTCCTGC 4782 Query 880 AGCCAAGATAACTACAACCCCATTTTGGGTTAAATAATTAATACGATCCCACCATGCTCT 939 || | ||| || | || || | | | || ||||| |||||||| | | Sbjct 4783 TGCTAGGATCACGGTGGCGCCTTTATCCGCCATGATTTTTATACGCTCCCACCAGCCACG 4842 Query 940 ATTATCAGTAACTGGAAGAAGTTTACCCCCCACGTTAAATTGAACATCTAAACTAACAAT 999 | || ||||||| | ||| || || | | ||||| ||||||| |||||||| Sbjct 4843 CACTGCGGTGACTGGAACTAATTTCCCACCAATATCGAATTGTACATCTAGGCTAACAAT 4902 Query 1000 ATCACCTGGGATG-GCATCACGAATGATAAGATCTAAGTCACCTGTATCATAGAAGTAAT 1058 ||| || ||| || |||| | || | ||| | ||| || || |||||||||||| Sbjct 4903 ATCTCC-GGGTTGAGCATGTTCAGCGAGCAAATCAAGGTCGCCAGTGTCATAGAAGTAAA 4961 Query 1059 AGTCGCACCCATAAGCAATTCCCGTAACGCCAAAATCATTTTTTGCTGCAGCAATACAAC 1118 | | ||| || || | ||||| || ||||| ||||| || | || | ||||||| Sbjct 4962 ATTGGCATTGATGGGCTACACCCGTTACACCAAATTCATTGTTAGTCGCGACGATACAAC 5021 Query 1119 CTGTGGAGGCTGTGCCGTGATTACAGTCTTCGGTTTC 1155 |||| || ||||| ||||| | || ||||| ||||| Sbjct 5022 CTGTTGATGCTGTACCGTGGTGGCAATCTTCAGTTTC 5058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 166731107705808