Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq7146 347 1e-90 seq15048 298 4e-76 >seq7146 Length=6253 Score = 347 bits (384), Expect = 1e-90 Identities = 463/641 (72%), Gaps = 7/641 (1%) Strand=Plus/Plus Query 61195 TTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTA 61254 |||||| || ||| |||| ||||| ||||| || || || || ||||| |||||| | Sbjct 5310 TTCATTTCGCACGTGCTGGCCTTCTTCGCCGCCTCCGATGGCATTGTCAACGAGAATCTG 5369 Query 61255 TTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAG 61314 |||| |||||| || |||||||||||| | |||||||| || ||||||||||||||| Sbjct 5370 GTGGAGCGTTTCAGCCAAGAGGTGCAAGTGACAGAGGCGCGCTGCTTCTACGGCTTCCAG 5429 Query 61315 ATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGG 61374 || |||||||||||||||||||||||||||||||| |||| || || || ||||||||| Sbjct 5430 ATCGCCATGGAGAATGTCCACTCGGAGATGTACAGCATTCTGATTGACACCTACATCAGG 5489 Query 61375 GAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGG 61434 || | | | || || |||||||||| |||| || | |||||||| ||| | Sbjct 5490 GATCCGCATCAGCGGGACTTCCTGTTCAATGCGGTCGAAACATTGCCGGCGGTCAAGAAG 5549 Query 61435 AAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTG 61494 || || || ||||| | |||||| || | |||| | || ||||| || | Sbjct 5550 AAGGCCGACTGGGCGATGGCATGGATCTCCTCGAAGTCGGCCAACTTCGGTGAGCGCATC 5609 Query 61495 CTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGG 61554 | || || || | |||||||| | || ||| || || ||| | ||||| ||| Sbjct 5610 ATTGCGTTCGCCGCCGTCGAGGGCATTTTCTTCTCGGGCAGTTTCGCCTCGATCTTCTGG 5669 Query 61555 TTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGAC 61614 ||||||| || || || |||||||| || |||||| ||| |||||||| ||||||||| Sbjct 5670 CTGAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAGTTGATCTCACGCGAC 5729 Query 61615 GAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCC- 61673 |||||| ||||||||||||| || || | ||| | | |||||||| | ||||| Sbjct 5730 GAGGGCCTGCATTGTGATTTCGCCTGCCTGATGTTCCAGC---ATCTGGTGCAGCGTCCC 5786 Query 61674 -GTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTC 61732 | || || || | ||||| | || ||||| | ||||||||||| || | Sbjct 5787 AGCCG--CGAACGCATCATCGAGATCATCGACGAAGCGGTGAAGATCGAACAGGAGTTCC 5844 Query 61733 TGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATA 61792 | || || || |||| ||| | ||||||||||| || ||| ||||| |||| | Sbjct 5845 TCACCGAAGCGCTGCCGGTCAATTTGATCGGCATGAACTGCAAACTGATGTCCGAGTACA 5904 Query 61793 TTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATG 61833 | ||||| || |||||||||||| ||||||| ||||| || Sbjct 5905 TCGAATTCGTGGCCGACCGTCTGCTGGTCGAACTGGGTGTG 5945 >seq15048 Length=4365 Score = 298 bits (330), Expect = 4e-76 Identities = 1193/1861 (64%), Gaps = 49/1861 (3%) Strand=Plus/Plus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 || |||||||| || || ||||| || || | || || ||||| || ||||| || || Sbjct 1286 TCAACCGTGAATTGAATGGCATTCGCTGCTGGTTTAGTTCTAAGGTAATACATTCCAGTT 1345 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197 || || ||||| ||| ||| ||||||| ||||||| ||| || ||||||| ||||| Sbjct 1346 TTTAGACCAGCTTTCCACGCAAAGAAATGAATCGATGTTAACTTCCCATAATTTGGCTCT 1405 Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATG 65257 | ||||| ||||| || ||||| || |||||||| | || | ||| |||||||| Sbjct 1406 CCAACATGAATATTAAATGACTGGCTTTGATCGATAAATGCTCCTCTATCAGCAGCCATT 1465 Query 65258 TCAATGATACGACGTCCC-GATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAAT 65316 ||| | || | | ||||| ||||| || || ||||| || |||| | Sbjct 1466 AAAATTGTT-GATTTAACTGATATTTCCCAAACAGTTTTGTAAAGATCCCGTATGTTTTG 1524 Query 65317 TGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCGA 65376 ||| || || || | || | |||||||| | | || || || ||| Sbjct 1525 TGGTATACTTTCGATATTTTGAATGGAACCACGGCTAGATATTATTTCGTTTTTCATTTG 1584 Query 65377 CTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGAA 65436 || ||||||| | | ||| | |||| | | |||||| | || | ||||| || Sbjct 1585 TTCATCCCACAAATCTAGTTCGGTTAGATCTCTTAGTAAGTGATGGTTAACCACTTGAAA 1644 Query 65437 CTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGT 65496 ||||| |||| ||| || || || || || ||||| |||||||| ||||| | Sbjct 1645 TTCGCCCGACAATACTCGCCGCGTGTAAATATTTGACGTATACGGTTCAAAAGATTCGTT 1704 Query 65497 GTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTCG 65556 || || | ||| || || || ||||| |||||||| || || || | | ||||| | Sbjct 1705 ATTTCCCAAAATCTGCGCGGTGGATGCTGTTGGCATTGGTGCCACAAGTAGAGAGTTCCT 1764 Query 65557 CAATCCGTTCATTTCA--ATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTATCG 65614 | || | ||||| || || | || || ||| | ||||| ||| | | Sbjct 1765 TATACCAT--ATTTCTTTATTTTATTTTTTAAATCAATCCAATCCCACAAA--TTTGTAG 1820 Query 65615 TCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAGG 65674 || | | | ||||||||| | ||||| |||| | ||| | || ||| Sbjct 1821 --GAGTTACTCC--CCACATATCATACTGCAGTATTCCCTTGCTGACGGGACTTCCGTCA 1876 Query 65675 AAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAA 65734 | | || || ||| | | || || | ||| || | ||| | |||| ||||| Sbjct 1877 TATGTTTCATATGGTCCAAATTTTTCTGCCAGCTCACAACTTGCCTCCAATGCGCCAAAA 1936 Query 65735 TAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATA 65794 ||||| || || || || | ||| | | || | || || || || || Sbjct 1937 TAAATTGTTTCAAAGATTTGCTTATTCAAAAGAAACGCGTTCTCACTTTCATAAGGGTAT 1996 Query 65795 CCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGC 65854 | ||| | | ||||| ||||||||| |||||||| |||||||| || || | ||| ||| Sbjct 1997 CTCATTAAAATAAAAGCGTCGGCCAGCCCTTGAACACCAATACCAATAGGTCTATGTCGC 2056 Query 65855 AAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAA 65914 ||||| || | | || || |||| || || ||||| | ||| || || ||| ||| Sbjct 2057 AAATTCGATTTTTTTGCTTCGGGTAATGGATAATAATTTACATCAATTATTTTATTTAAA 2116 Query 65915 TTGCGTGTCACCACATGCACGATACGTCGCAATTGTTCGAAATCAAAATGTTTAGGACGA 65974 || || || | | || | |||| || || ||||| |||| Sbjct 2117 TTCTTGGTGACTATTTTTGTGACCTCTTTTAATTTTTTAAAGTCAAAGACTTTA------ 2170 Query 65975 TCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCT 66034 || | || ||||||| | | |||| || ||||||||||| || ||| Sbjct 2171 TCCGCTGT---------CACAAACATATTTAAAGCAATCGAAGCGAGGTTGCAAACGGCT 2221 Query 66035 ATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTG 66094 ||||| || || || | ||| || |||||||| || || ||||||||||| ||| || Sbjct 2222 ATCTCATCTGGTGCCGAATATTCAACAATTTCAGTACATAGATTACTGCATTTTATAGTA 2281 Query 66095 CCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTG 66154 || | || ||||| || || || | |||||||| ||| ||||| | ||| || || || Sbjct 2282 CCGAGGTTTTGTTGGTTGCTTTTTCTATTGCATGAATCTTTGTATAGCATATATGGGGTA 2341 Query 66155 CCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGT 66214 || || || ||||| | ||| || || || |||||| | | || || || | | Sbjct 2342 CCTGTTTCCACTTGTGCCTCTATAATCGCAAACCAAAGGGACTGGGCTTTTACTTTTCTA 2401 Query 66215 ACCGCCC-TACCT-TTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTC---ACCCC 66269 ||| | | ||| || | || || | ||| || | | || || ||| ||||| Sbjct 2402 TTCGCGCGTCCCTCTTTC--TCATATTTTTCATACAAGGTCTCAAA---TTCCGAACCCC 2456 Query 66270 ATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTT 66329 | ||||| || | ||||||||||| || ||||| || |||||||| | | || Sbjct 2457 AAACTTCATGCAAGCCAGGACACTTGTGAGGGCACATAAGGGACCAATCTTCGTTAGCTT 2516 Query 66330 CTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTT 66389 | || || |||||| | ||| || ||||| | || || || | ||| || |||| | Sbjct 2517 CAACTCGTTTCATAAACAAATCGGGAATCCACAAAGCATAAAATAAATCACGAGCTCTAT 2576 Query 66390 GCTCCTCAATG-CCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCAT 66448 | || || || ||||| ||||| || || | |||||||| || || | ||||| Sbjct 2577 GTTCTTCCTTGCCCGTG-TTTTTCTTTAAATCCAAAAACTCAAAAATATCAGAGTGCCAA 2635 Query 66449 GGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGA 66508 || || | |||||| || || | || | ||| ||||| |||||||| |||||||| Sbjct 2636 GGCTCTAAGTAGATTGCAAAAGCTCCAGGCCTTTTTCCGCCTCCTTGGTCAACGTAGCGG 2695 Query 66509 GCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCG 66568 || ||||||||||| || | | ||| || || || |||||||| | ||||| || || Sbjct 2696 GCCACATTGTTGAAAACTCTTAGCATTGGCACCAGGCCGTTAGAAGTTCCATTAGTTCCT 2755 Query 66569 TCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTC 66628 || | | ||| || ||||| |||||||| | |||||||| || || | Sbjct 2756 GATATAGATGTGCCTTTAGCTCGTATGCAATGAACATTTATTCCAATACCTCCAGCTGAT 2815 Query 66629 TTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTG 66688 || || || ||| || | | |||| || || || ||||| || || | Sbjct 2816 TTAGATATCATAGCGCATTGTTCAACTGATTTAAAAATACCTTCAATTGAATCTGCAACC 2875 Query 66689 ATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTG 66748 || || || ||| |||| || |||||| ||| ||| || || | || || || Sbjct 2876 ATTGTAAGTAGGAAGCAAGATGAAAGTTGCGGTCGAATTGTTGCAGCAGCAAAAAGTGTC 2935 Query 66749 GGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCA 66808 |||| || |||||||| | |||| || ||||| || || || | | ||| Sbjct 2936 GGTGATGCATGCGTAAAAAATCTTTCCGACAGATAGTTGTAGGTTTCAATTGCGGAATCT 2995 Query 66809 ATGTTTTCGCCATGAATCCCGAGTG-CACATCGCATCAGGAGGTATTGAGGCCGTTCGAC 66867 || | || |||||||| || | | ||| | ||||| | || ||||| | ||| | Sbjct 2996 ATATCATCACCATGAATACCTATAGACAC-CCTCATCAACATGTGCTGAGGTCTTTCAGC 3054 Query 66868 CA----GCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGT 66923 | |||| ||||| | || ||| || || ||||| || || || | ||||| | Sbjct 3055 GATTTTGCCG----TTGATTTTCAATAAATAAGACCGTTCAAGTGTTTTAAATCCAAAAT 3110 Query 66924 A 66924 | Sbjct 3111 A 3111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397407298790240