Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_011356.1 Length=54896 Score E Sequences producing significant alignments: (Bits) Value seq12086 109 2e-19 seq22545 105 2e-18 >seq12086 Length=38917 Score = 109 bits (120), Expect = 2e-19 Identities = 87/105 (83%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 17631 TATATATTCGAAGGCGAACAAGGTAAGCGAGACAGCATTATTGTCGTCGCTCAGTTGTCG 17690 ||| |||| ||| ||| |||||||||| |||||||||||||| || ||||| || ||| Sbjct 1697 TATTTATTTTCAGGTGAAGAAGGTAAGCGCGACAGCATTATTGTAGTTGCTCAATTATCG 1638 Query 17691 CCGGAATTCACCGCTCGCCTTGTTGACCGCTGGCGAGAACTCGAA 17735 || ||||| || ||||| || |||||||||||| |||||||||| Sbjct 1637 CCTGAATTTACAGCTCGACTAGTTGACCGCTGGAAAGAACTCGAA 1593 >seq22545 Length=4013 Score = 105 bits (116), Expect = 2e-18 Identities = 260/392 (66%), Gaps = 2/392 (1%) Strand=Plus/Plus Query 53296 TATTCATACCGTTAATGCAGGTCACGGTTCGTCTGCCGCATAAATTTCTCTGCTACATCG 53355 || |||| || ||| | ||||||| | || | || |||||| | | || ||| | Sbjct 523 TAGTCATTCCATTATTAAAGGTCACCATCCGCTTACCCCATAAAGTGATGTGTTACCTGA 582 Query 53356 TCTTTTCCATCTTCTGCATCATGGGCACCTGGTTTGNGTTGCACATTGACGATTCTATTG 53415 | || || |||| || || || || || | |||| |||| || | |||||||||| Sbjct 583 TTTTCTCTGTCTTTTGTATTATCGGAACGTATTTTGGTCTGCATATCAATGATTCTATTG 642 Query 53416 CCAATACCCGTGCGATAGGCGCGGTAATGGGCGGCTTACTCGGCGGTCCGGTCGT-CGGT 53474 | ||||| || || || || |||||| | || || |||| ||||| || | ||| ||| Sbjct 643 CTAATACACGCGCCATTGGTGCGGTATTAGGTGGACTACTTGGCGGCCCCGCCGTGGGGT 702 Query 53475 GGGCTGGTTGGCCTGACCGGCGGGTTACATCGATATTCGATGGGGGGCATGACCGCGCTA 53534 ||| || ||| | || | |||| |||| || ||||| | ||||| |||| || | Sbjct 703 TTGCT-GTAGGCTTTACTGCCGGGATACACCGTTATTCATTAGGGGGTATGAGTGCATTT 761 Query 53535 AGTTGCATGATCTCGACCATCGTTGAAGGATTGCTCGGCGGCCTGGTACACAGCATCCTG 53594 || ||||| ||||| || || |||||| | | || || | || || | | Sbjct 762 GCCTGTATGATTTCGACTATTGTGGAAGGACTTATTGGTGGGTTAGTTCATCGTTACTAT 821 Query 53595 ATCCGTCGCGGGCGCACTGATAAAGTCTTTAACCCCATTACCGCTGGTGCCGTCACGTTC 53654 || ||||| | | ||||| | |||||||| |||| ||| | || ||| ||| Sbjct 822 ATGAAACGCGGTGAAATTAATAAAATTTTTAACCCTGTTACTGCTAGCTGCGCCACTTTC 881 Query 53655 GTCGCTGAAATGGTGCAAATGCTGATCATCCT 53686 || |||||| || | || ||| | || || || Sbjct 882 GTGGCTGAACTGCTTCAGATGTTAATTATTCT 913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175476462023736