Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq18736 120 1e-21 seq25844 95.1 5e-14 seq3100 95.1 5e-14 >seq18736 Length=4454 Score = 120 bits (132), Expect = 1e-21 Identities = 242/356 (68%), Gaps = 6/356 (2%) Strand=Plus/Plus Query 626202 AATGGGAGGACTACTTTATGATGCTGGCCCTTCTCTCGGCCCAGCGCTCCAAGGACCCCA 626261 |||||| || ||||| ||| |||| || | || | |||||| |||||||||| Sbjct 3798 AATGGGGCGATTACTTCATGGCCACGGCCATTTTGGCGTCGCAGCGCAGCAAGGACCCCG 3857 Query 626262 ACACTCAGGTCGGGGCCTGCATCGTCAACGAGGACAAGCGCGTCGTGTCTATGGGCTACA 626321 ||| ||||| || |||||||| || || || || ||| | ||| | || ||||||| Sbjct 3858 TCACACAGGTGGGCGCCTGCATTGTGGACAGCGAGAACCGCATTGTGGCGATCGGCTACA 3917 Query 626322 ACGGCTTCCCGCGTGGCTGCAATGACGACGTCTTTCCTTGG----AAGCG-CGATAGCGC 626376 | || |||||||| |||| ||||||| |||| | ||| ||||| ||| | | Sbjct 3918 ATGGGTTCCCGCGCAACTGCCCGGACGACGACTTTTCGTGGGACAAAGCGTCGAAACGGG 3977 Query 626377 ATGTGAG-GACATTCTCGACAGCAAGAGCCTCTATGTGGTTCACGCCGAACTCAACGCCA 626435 | | || || || || ||||||| | |||||||| |||||||| | ||||||| Sbjct 3978 ACGGCAGCGATTCGCTGGAGGACAAGAGCTTGTATGTGGTGCACGCCGAGGTGAACGCCA 4037 Query 626436 TCCTCAACAAGAACGCCAAGTCTATCAAGGGCTGCACTGTCTACGTCACTCTCTTTCCAT 626495 |||| |||||||| ||| | | |||| | | | ||| || || | ||||| | Sbjct 4038 TCCTGAACAAGAATGCCGCGGACCTGAAGGACACCCGTCTCTTTGTGACGTTGTTTCCGT 4097 Query 626496 GTTGCGAATGTACCAAGGCCATCATCCAGTCTGGCATAACGCGCGTCGTCTACCTG 626551 | |||||| |||| |||| ||||| ||||| | || | || |||| || Sbjct 4098 GCAACGAATGCGCCAAACTGGTCATACAGTCGGGCATCAAGCACATCTACTACTTG 4153 >seq25844 Length=6310 Score = 95.1 bits (104), Expect = 5e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 349074 CGTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGG 349133 ||| || ||||||||||| | ||||| ||||| || || || ||||||| || || | Sbjct 2487 CGTTGATGATCTCCTTGAGACGGGGCACGCCCAACGTGACATTTTTGGCCGACACACCAG 2428 Query 349134 CAAAGTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGA 349193 | || ||||| || | | |||| ||| ||| ||||||||||| | ||| |||| | Sbjct 2427 CGAAATGGAATGTGTTCAAAGTCATCTGGGTGGCGGGCTCGCCGAGCGATTGGGCCGCCA 2368 Query 349194 GGATGCCTACCATCTCGCCGGG 349215 || ||| |||||||||||||| Sbjct 2367 GGGCGCCCACCATCTCGCCGGG 2346 >seq3100 Length=5382 Score = 95.1 bits (104), Expect = 5e-14 Identities = 240/358 (67%), Gaps = 9/358 (3%) Strand=Plus/Plus Query 350926 CTGCTCGCGCGTGAGGAACACGTCGGGCCACGAGAGCCTGGCCATGCCGAGCATGGCATC 350985 ||| |||||||||| |||||| ||| || | | | || || | || || || || Sbjct 2715 CTGTTCGCGCGTGATGAACACATCGCGCTTGGTCATCTTGCGCACGGCGGTCAGGGTGTC 2774 Query 350986 CTGCACCGGGGCCACGATGTTGTGGTTGGCCTGCGGGCTCACCATGTTGGAGGCCACGTC 351045 |||||| | ||| || | |||||||||||| | | || |||| | | ||| Sbjct 2775 CTGCACAATGCCCATGACAGGCTTGTTGGCCTGCGGCGTGATGAT-TTGGCG-CGGCGTG 2832 Query 351046 CATGAGGGTGG-CTCCG--TCGGCGCGCGCGGCCAGATCCTGCACGGCGTGGCCGTTGGT 351102 ||| || || |||| |||||||||| ||| |||| |||| ||| | Sbjct 2833 -ATGTGGATGTTCTCCACTTCGGCGCGCGTCTCCATGGACTGCGGCACGTGCAAGTTCAT 2891 Query 351103 CTCGTCTCCGTCAAAGTCGGCGTTGTAGGGCTGGGTGACCGACGGGTTGATGCCGATGGT 351162 |||||| ||||| || ||||||||||| ||| ||| |||| |||| |||| || || Sbjct 2892 CTCGTCGCCGTCGAAATCGGCGTTGTACGGCGACGTGCACGACAGGTTCATGCGGAACGT 2951 Query 351163 GTAGCCCCGCGGGTTGCGCCTCACGCGGTGCACCATGATGGACCCGTTGTGGAGCGTGGG 351222 | || ||| | |||| || ||| |||| || | ||||| ||||| || Sbjct 2952 CGA---CCACGGCAACACCTTCACCCGATGCCCCATCATACTCATCTTGTGCAGCGTCGG 3008 Query 351223 CTGGCGATTGTGGATGATGATGTCGCCATCGCGCAAGTGCCTCTCCACCTTGTCGCCG 351280 ||| |||||| ||| | | |||| | || ||||| |||| ||||||||||| |||| Sbjct 3009 CTGCCGATTGAAGATCACCAGGTCGTCGTCACGCAAATGCCGCTCCACCTTGTAGCCG 3066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2083831705208468