Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_030124.1 Length=2723 Score E Sequences producing significant alignments: (Bits) Value seq21929 120 5e-24 seq11882 114 2e-22 >seq21929 Length=1544 Score = 120 bits (132), Expect = 5e-24 Identities = 122/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 2118 CTTGTCATAGAGATATCCGTCTTTCATCTGCTCGATGGCCGACCACATGGCCTTTCTGAC 2177 |||||| |||||||| |||||||| | |||||||| || |||||||||| || || | Sbjct 1530 CTTGTCGTAGAGATAGCCGTCTTTGAGTTGCTCGATTGCTGACCACATGGATTTCCTTGC 1471 Query 2178 CTTGCCGTCGGCCCTTGGCATGTCGATTATGTAGCCTTTGGACGGCTTGGCCATTGCGCA 2237 |||| || || ||||| | || |||| | | || | || ||||| ||||| ||| Sbjct 1470 CTTGGATTCCGCTCTTGGTAGATCTATTACGAATCCGTCGGCTGGCTTTGCCATGGCGAT 1411 Query 2238 TGCCATGATGTCCTCGGCTTTCTCTAACGGTGGTATGAA 2276 |||||||||||||| ||||| || || ||||||||||| Sbjct 1410 AGCCATGATGTCCTCTGCTTTGTCCAATGGTGGTATGAA 1372 >seq11882 Length=3011 Score = 114 bits (126), Expect = 2e-22 Identities = 150/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 2176 ACCTTGCCGTCGGCCCTTGGCATGTCGATTATGTAGCCTTTGGACGGCTTGGCCATTGCG 2235 || ||||| || |||||||||| ||||||||||||||| || | ||||| ||| || Sbjct 2666 ACTTTGCCTTCTGCCCTTGGCAGGTCGATTATGTAGCCCTTTGCGGGCTTCTTCATCGCT 2607 Query 2236 CATGCCATGATGTCCTCGGCTTTCTCTAACGGTGGTATGAACGTCCCCATGTGGCATGCG 2295 ||| ||||||| | |||| | ||||||||| | ||| | ||| ||| Sbjct 2606 ACCCTCATTATGTCCTTGCTCGTCTCCATCGGTGGTATCAGCGTGGCTTGGTGCGTTGCT 2547 Query 2296 ACCATGTACTTGCGGAGCCAAGACTTCCCGTGTCTGCCTTTGTCATCGGTGATGACTAGT 2355 | || || ||||||||||| ||||| || ||||| || || ||| ||| ||||| Sbjct 2546 ATCAGGTGTTTGCGGAGCCATGACTTTCCATGTCTTCCACGTTCGTCGTAGATCACTAGA 2487 Query 2356 ATTTCACGGTCGTTTTGCTTCTTCCACA 2383 |||| |||||||| ||||| ||||||| Sbjct 2486 ATTTGGCGGTCGTTCTGCTTGTTCCACA 2459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8601767765284