Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_031940.1 Length=77375 Score E Sequences producing significant alignments: (Bits) Value seq23044 239 2e-58 seq26734 109 3e-19 >seq23044 Length=7840 Score = 239 bits (264), Expect = 2e-58 Identities = 311/429 (72%), Gaps = 1/429 (0%) Strand=Plus/Plus Query 77 ACAGCCGAACGCTTTCAGAAATGGGTGGAAATGGGCGTTCTGACTGTTACCGCTGGTGCG 136 || || ||||| ||| ||||||||||||| ||| | ||| | || | ||||| Sbjct 2313 ACCGCAGAACGGTTTAGAAAATGGGTGGAAACAGGCCATTTGAAGCTAACTGACGGTGCC 2372 Query 137 GAGGTGGATTATCGCTACATCCTCGAGGAGGCCAAAGCGGCGAACAAAATCAGCCCGGTC 196 || | ||||||||| || | ||||| |||||||| | ||| | | |||| | Sbjct 2373 GAAATTGATTATCGCGTTATTTTAGAGGATGCCAAAGCAGATAACTTGAATAACCCGATT 2432 Query 197 AGTGAGCACCC-ATCGACCCCTTCGGGGCGACCGGGCTGTCGCATGACCTTGCTGATGAA 255 | ||| ||| || ||||| ||| || || | || || | || |||||||| Sbjct 2433 AATGAAAGCCCGATTGACCCTCACGGCGCAACAAACTTATCTCACCAACTGGCTGATGAG 2492 Query 256 GACCTGAACCCCATCACCATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAG 315 | | ||||| |||||||| |||| |||||||| || ||||| || |||||||||||| Sbjct 2493 GGATTAAACCCTATCACCATTGTTCAAAACTACACGAATATGTCTGACCCGATGAAAGAG 2552 Query 316 CTGGAAGCGGCGATTGAATCGGGGCGCTTTCATCATGACGGCAATCCCATCATGACCTGG 375 || ||||||||||||| || ||||||||||||||||| ||||| || |||||||| ||| Sbjct 2553 CTTGAAGCGGCGATTGCTTCAGGGCGCTTTCATCATGATGGCAACCCAATCATGACATGG 2612 Query 376 TGTATCGGCAACGTAGTCGGCAAAACCATTCCGGGTAACGATGATGTGGTGAAGCCTGTC 435 ||||| || || || || || ||| | ||||||||||||||||| || | |||| | Sbjct 2613 TGTATGGGGAATGTGGTGGGTAAATATTTACCGGGTAACGATGATGTCGTTAGGCCTATA 2672 Query 436 AAGGAGCAGGCGGAAAATAAAATCGATGGTGCAGTTGCACTGATTATGGCGGTTGGCAGA 495 || ||||| ||||||||||| || ||||| || || | |||||||| | || | Sbjct 2673 AAAGAGCAAAACGAAAATAAAATTGACGGTGCTGTCGCGTTAATTATGGCTATCGGACGG 2732 Query 496 GCCATGCTG 504 || |||||| Sbjct 2733 GCGATGCTG 2741 Score = 237 bits (262), Expect = 8e-58 Identities = 361/511 (71%), Gaps = 6/511 (1%) Strand=Plus/Plus Query 38029 GTTTTTACGCCCATCAAAGGTGTTGAGCCACCGGAGTGGTTCGCTGAAGAAGATCTCCCT 38088 || |||||||| | |||||||| | |||||| || |||||| |||| | || | Sbjct 513 GTATTTACGCCGCTAAAAGGTGTGGCGCCACCTGATTGGTTCACTGAGAACGAGTTAGAG 572 Query 38089 CTCGCCACGATCATGTGGCAACTGACAACCAAAGAACTCTGCGGTCAGGGCCTGCTGTGC 38148 || |||| |||||||| | || || | ||||||||||| || ||||| | | || Sbjct 573 CTTGCCATTGTCATGTGGGAGCTCACGATAAAAGAACTCTGTGGACAGGGTATTTTATGT 632 Query 38149 GTGACTGACCTGGCGGTACTTGAGCGGTGGTGCGTGGCCTATGAGTTCTGGCGACGTGCC 38208 | || ||||| || || |||||||| ||||| ||||||||| | | ||||| ||| Sbjct 633 ATTACCGACCTCGCTGTGCTTGAGCGCTGGTGTGTGGCCTATCATATTTGGCGTAATGCA 692 Query 38209 GTGAAAAATAT--TGCCATACAGGGCAACAC-CATCACCGGTGCAATGGGCGGCATGGTC 38265 || | |||| ||| | || | ||| | | | | ||||||| ||| ||| | Sbjct 693 GTCATTGATATCATGCGAGACGG---AACTCGCTTAATTGGTGCAACGGGTGGCCCAATA 749 Query 38266 AAAAATCCGGAGCTGACCGCCAAAAAAGAACAGGAGTCCGAGATGAGCAGCACGGGTGCA 38325 ||||| || || | || | |||||||| || || ||| ||| | || || ||| Sbjct 750 AAAAACCCTGACTTAACGACAAAAAAAGAGCAAGAAAGCGAAATGGATCGTACTGGCGCA 809 Query 38326 ATGCTCGGACTCGACCCCAGCAGCCGCCAGCGTCTGATTGGCCTGGCGGGGCAGAAGAAA 38385 ||| | || | || || ||||| |||||||| | |||||| |||| ||||| |||||| Sbjct 810 ATGTTGGGTTTAGATCCGAGCAGTCGCCAGCGGTTAATTGGCATGGCAGGGCAAAAGAAA 869 Query 38386 GCCACTAACCCGTTTCTGAAAATCATCGAGTCATGAGCCGGAAATCTTACCCCAACGTAA 38445 ||| || ||| ||| ||||| |||||||||| ||||||||||| ||||| | Sbjct 870 CAAGATAATCCATTTATGAGGATCATTTCATCATGAGCCGTAAATCTTACCCAAACGTCA 929 Query 38446 ATGCTGCCAATCAGTATGCCCGTGATGTCGTGCGCGGAAAGATTGTGGCCTGCCAGTTTG 38505 ||| || ||||| ||||| |||||||| || ||||| ||| |||| || || |||| || Sbjct 930 ATGTGGCAAATCAATATGCGCGTGATGTGGTTCGCGGCAAGGTTGTAGCGTGTCAGTATG 989 Query 38506 TGATTCAGGCCTGCCAGCGCCATCTTGATGA 38536 | ||| | || ||||| || || ||||||| Sbjct 990 TCATTGATGCTTGCCAACGACACATTGATGA 1020 Score = 237 bits (262), Expect = 8e-58 Identities = 310/429 (72%), Gaps = 0/429 (0%) Strand=Plus/Plus Query 39663 ACAGCCGAACGCTTTCAGAAATGGGTGGAAATGGGCGTTCTGACTGTTACCGCTGGTGCG 39722 || || ||||| ||| ||||||||||||| ||| | ||| | || | ||||| Sbjct 2313 ACCGCAGAACGGTTTAGAAAATGGGTGGAAACAGGCCATTTGAAGCTAACTGACGGTGCC 2372 Query 39723 GAGGTGGATTATCGCTACATCCTCGAGGAGGCCAAAGCGGCGAACAAAATCAGCCCGGTC 39782 || | ||||||||| || | ||||| |||||||| | ||| | | |||| | Sbjct 2373 GAAATTGATTATCGCGTTATTTTAGAGGATGCCAAAGCAGATAACTTGAATAACCCGATT 2432 Query 39783 AGTGAGTCACCCATCGACCCCTTCGGGGCGACCGGGCTGTCGCATGACCTTGCTGATGAA 39842 | ||| || || ||||| ||| || || | || || | || |||||||| Sbjct 2433 AATGAAAGCCCGATTGACCCTCACGGCGCAACAAACTTATCTCACCAACTGGCTGATGAG 2492 Query 39843 GACCTGAACCCCATCACCATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAG 39902 | | ||||| |||||||| |||| |||||||| || ||||| || |||||||||||| Sbjct 2493 GGATTAAACCCTATCACCATTGTTCAAAACTACACGAATATGTCTGACCCGATGAAAGAG 2552 Query 39903 CTGGAAGCGGCGATTGAATCGGGGCGCTTTCATCATGACGGCAATCCCATCATGACCTGG 39962 || ||||||||||||| || ||||||||||||||||| ||||| || |||||||| ||| Sbjct 2553 CTTGAAGCGGCGATTGCTTCAGGGCGCTTTCATCATGATGGCAACCCAATCATGACATGG 2612 Query 39963 TGTATCGGCAACGTAGTCGGCAAAACCATTCCGGGTAACGATGATGTGGTGAAGCCTGTC 40022 ||||| || || || || || ||| | ||||||||||||||||| || | |||| | Sbjct 2613 TGTATGGGGAATGTGGTGGGTAAATATTTACCGGGTAACGATGATGTCGTTAGGCCTATA 2672 Query 40023 AAGGAGCAGGCGGAAAATAAAATCGATGGTGCAGTTGCACTGATTATGGCGGTTGGCAGA 40082 || ||||| ||||||||||| || ||||| || || | |||||||| | || | Sbjct 2673 AAAGAGCAAAACGAAAATAAAATTGACGGTGCTGTCGCGTTAATTATGGCTATCGGACGG 2732 Query 40083 GCCATGCTG 40091 || |||||| Sbjct 2733 GCGATGCTG 2741 Score = 161 bits (178), Expect = 5e-35 Identities = 179/239 (75%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 39084 ACCACGATGCTTACCGGGATGGGCGCGCGACGTCAGCCACTGATGTGGGCCATCACCACC 39143 || || ||| | || |||||||| || |||| ||||| |||||||||| || ||||| Sbjct 1634 ACAACCATGTTAACGGGGATGGGGGCAAGACGGCAGCCGTTGATGTGGGCTATTACCACA 1693 Query 39144 GCCGGGTACAACATTGAGGGGCCGTGCTACGACAAGCGGCGGGAAGTCATCGAGATGCTC 39203 || || || ||||| || ||||| |||||||| ||||| || ||||| || |||||| | Sbjct 1694 GCAGGTTATAACATCGAAGGGCCTTGCTACGATAAGCGTCGCGAAGTGATTGAGATGTTG 1753 Query 39204 AACGGCTCGGTGCCTAACGATGAACTGTTCGGGATCATCTATACCGTTGATGAAGGTGAC 39263 || || |||| || || || ||| | ||||| | ||||||||||| ||||| || ||| Sbjct 1754 AATGGTACGGTTCCCAATGAGGAATTATTCGGTGTTATCTATACCGTGGATGAGGGCGAC 1813 Query 39264 GACTGGACCGACCCGCAGGTGCTGGAAAAAGCCAATCCAAATATTGGCGTGTCGGTTTA 39322 |||||||| || || | |||| | ||||| || || || || || || || || || Sbjct 1814 GACTGGACAGATCCTAACACGCTGAAGAAAGCTAACCCGAACATGGGGGTTTCAGTCTA 1872 Score = 149 bits (164), Expect = 3e-31 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 38754 ACCGAAATCCCCCGTAAGAACGGCAAATCGGCAATCTCTGCCGGTGTTGCCCTGTATTGT 38813 ||||| ||||||||||| || || |||||||| || ||||| || || || | |||||| Sbjct 1294 ACCGAGATCCCCCGTAAAAATGGGAAATCGGCTATTTCTGCGGGGGTCGCATTATATTGT 1353 Query 38814 TTTGCCTGTGATAACGAGTTTGGCGCGGAAGTGTATTCCGGTGCCACGACAGAGAAACAG 38873 ||| | ||||||||||| ||||| || ||||| || || ||||| || || || || || Sbjct 1354 TTTACGTGTGATAACGAATTTGGTGCTGAAGTTTACTCGGGTGCAACAACCGAAAAGCAA 1413 Query 38874 GCGTGGGAAGTCTTTCGCCCGGCGCGACTGATGTGTAAACGCACACCCATGCTGACGGAA 38933 ||||||||||| || | || || | | ||||| || || ||||| | || || ||| Sbjct 1414 GCGTGGGAAGTGTTCAGGCCTGCAAAATTAATGTGCAAGCGTACACCGTTACTCACAGAA 1473 Query 38934 GCGTTCGGGATTGAGGTTAACGCCTCAAAC 38963 || || || ||||| || |||||| |||| Sbjct 1474 GCATTTGGTATTGAAGTGAACGCCAAAAAC 1503 >seq26734 Length=1040 Score = 109 bits (120), Expect = 3e-19 Identities = 188/268 (70%), Gaps = 4/268 (1%) Strand=Plus/Plus Query 39331 TTTTGTTAAGTCAGCAGCAGCGTGCGAAAAATAACGCCCGTCTGGCAAACGTCTTTAAAA 39390 |||| | |||||||| | || || |||| || | || || ||| | |||| |||| Sbjct 764 TTTTAATTAGTCAGCAAAATCGAGCTAAAAGCAATCCGCGCCTAACAAGCATCTTCAAAA 823 Query 39391 CAAAACACCTCAATATCTGGGTGTCGGCGCGTTCGGCGTATTTCAACCTGGTGAGCTGGC 39450 | || || | ||||||||||| || |||||||| ||||||||||| || |||| |||| Sbjct 824 CTAAGCATTTAAATATCTGGGTTTCAGCGCGTTCAGCGTATTTCAATATGTTGAGTTGGC 883 Query 39451 -AGAGCTGCGAGGATAAATCACTGACCCTTGAGCAGTTCGAGGGGCAGCCGTGCATTCTG 39509 |||| || || |||||| | ||||| || || ||| || ||||| | || ||| Sbjct 884 GAGAG-TGTGAAGATAAAACCCTGACACTAGAAATGTTTGAAGGGCAATCTTGTGTTCAA 942 Query 39510 GCCTTTGACCTGGCGCGTAAGCTGGATATGAACAGCATGGCGCGACTT-TATACCCGCGA 39568 | | ||| |||| | ||| ||||||||||| || || | || | ||| ||||| Sbjct 943 TCTCTCGACTTGGCCAGAAAGTTGGATATGAAC-TCACGGGTTAAATTGTTTACGCGCGA 1001 Query 39569 GATTGACGGTAAAACGCATTACTACAGT 39596 ||||| || | |||||| ||| || Sbjct 1002 AATTGATGGCAGGCGGCATTATTACTGT 1029 Score = 104 bits (114), Expect = 1e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 38619 TTGCCACACACCAAGGGGGAGTGGGCATTCAAACGGATGCCCATCACGCTGGAGCCGTGG 38678 || || ||||| ||||||||||||||||| ||||| || || || ||||| || |||||| Sbjct 5 TTACCCCACACAAAGGGGGAGTGGGCATTTAAACGAATTCCGATTACGCTCGAACCGTGG 64 Query 38679 CAGCTCTTTGTGATCTGCTGCGCGTTTGGCTGGGTCAATAAAGGCTCCCGGCTGCGCCGC 38738 || || ||| | | || || || ||||||||||| | ||||| | || | || Sbjct 65 CAACTTTTTATCGTTTGTTGTGCATTTGGCTGGGTGCAAAAAGGTACGAAACTTAGGCGA 124 Query 38739 TTCCGGGAGGTGTATACCGAAATCCCCCGTAAGAA 38773 || || || || || ||||| ||||||||||| || Sbjct 125 TTTCGTGAAGTTTACACCGAGATCCCCCGTAAAAA 159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 247375167894736