Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq7322 242 7e-62 seq3237 140 6e-31 seq12 138 2e-30 seq9 125 1e-26 seq4 95.1 2e-17 seq532 84.2 4e-14 >seq7322 Length=3513 Score = 242 bits (268), Expect = 7e-62 Identities = 205/248 (83%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| |||||||||||||| Sbjct 2429 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGAATACATTAGCAT 2488 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | | |||| | |||| ||||| |||||| | |||| || |||||||| Sbjct 2489 GGGATAACATCACAGGATTT-CGGTCCTATTCTGTTGGCCTTCAGGATCGGAGTAATGAT 2547 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| ||||||||| | ||||| || |||||||||||||||||||||||||| Sbjct 2548 TAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 2607 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| ||||||||||| || |||||||||||||||||||||| |||||||| Sbjct 2608 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 2666 Query 311 GTTAGGGG 318 ||| |||| Sbjct 2667 GTTGGGGG 2674 >seq3237 Length=36711 Score = 140 bits (154), Expect = 6e-31 Identities = 187/253 (74%), Gaps = 8/253 (3%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||| || | |||| || | ||| | || ||||||||||| ||||||||||| | Sbjct 13379 TGCTCTTAACCGAGTGTCGAGGTGGGCCGGCACGTTTACTTTGAACAAATTAGAGTGCTT 13438 Query 100 AAAGCAGGC---CTTTGCTCGAATAC-ATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 ||||||||| || || |||||| | |||||||||||| ||||||||| | |||| Sbjct 13439 AAAGCAGGCAGTGTTAGCCTGAATACTGTGTGCATGGAATAATGGAATAGGACCT-CGGT 13497 Query 156 TCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 |||||||||||||||| | | | | ||||||||||||||||| || |||||| | Sbjct 13498 TCTATTTTGTTGGTTTTTGGAATTTGAGGTAATGATTAATAGGGACAGGCGGGGGCATTC 13557 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG-AAGACTAACTACTGCGAAAGC 273 ||||| | | |||||| |||| |||| || | ||||| ||| |||||||| Sbjct 13558 GTATTGCGACATTAAAGGTGATATTCGTGGA-CCATCGCAAGACGAACCTAAGCGAAAGC 13616 Query 274 GTTCACCAAGGAT 286 || |||||||| Sbjct 13617 ATTTGCCAAGGAT 13629 >seq12 Length=46368093 Score = 138 bits (152), Expect = 2e-30 Identities = 182/249 (73%), Gaps = 8/249 (3%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||| || | |||| || | ||| | || ||||||||||| ||||||||||| | Sbjct 24067395 TGCTCTTAACCGAGTGTCGAGGTGGGCCGGCACGTTTACTTTGAACAAATTAGAGTGCTT 24067454 Query 100 AAAGCAGGCC---TTTGCTCGAATACATTA-GCATGGAATAATAGAATAGGACGTGCGGT 155 ||||||||| || || ||| || | |||||||||||| ||||| || | ||| Sbjct 24067455 AAAGCAGGCAGTGTTAGCCTGAAWACTGTGTGCATGGAATAATGGAATATKACCTT-GGT 24067513 Query 156 TCTATTTTGTTGGTTTCTAGGACC--GCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213 | |||||||||||||| ||||| | ||||||||||||||||| || |||||| | Sbjct 24067514 TATATTTTGTTGGTTT-TAGGAATTTGAGGTAATGATTAATAGGGACAGACGGGGGCATW 24067572 Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273 ||||| || || |||||||||||||||| ||||| ||| |||||||| Sbjct 24067573 CGTATTGCGACGTTAGWGGTGAAATTCTTGGATCGTCGCAAGACGAACCTAAGCGAAAGC 24067632 Query 274 GTTCACCAA 282 ||||| || Sbjct 24067633 ATTCACTAA 24067641 >seq9 Length=22721933 Score = 125 bits (138), Expect = 1e-26 Identities = 167/223 (75%), Gaps = 11/223 (5%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC---CTTTGCTCGAATAC-ATTA 126 || ||||||||||| |||||| |||| | ||||||||| || || |||||| | Sbjct 9555684 ACGTTTACTTTGAACAAATTACAGTGCTTAAAGCAGGCAGTGTTAGCCTGAATACTGTGT 9555743 Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA--CCGCCGT 184 |||||||||||| ||||||||| | || |||||||||||| |||| | ||| | || Sbjct 9555744 GCATGGAATAATGGAATAGGACCT-CGATTCTATTTTGTT-GTTTTTCGGAATTTGAGGT 9555801 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 ||||||||||||| |||| |||| || ||||| || ||||||||||||||||| Sbjct 9555802 AATGATTAATAGGRATAGGTGGGGCATTC-GTATTGCGACGTTAGAGGTGAAATTCTTGG 9555860 Query 245 ATTTATTG-AAGACTAACTACTGCGAAAGCGTTCACCAAGGAT 286 | | || | ||||| ||| | ||||| || |||||||| Sbjct 9555861 A-TCATCGCAAGACAAACCTAAGTTAAAGCATTTGCCAAGGAT 9555902 >seq4 Length=10813142 Score = 95.1 bits (104), Expect = 2e-17 Identities = 137/189 (72%), Gaps = 6/189 (3%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC---CTTTGCTCGAATAC-ATTAGCA 129 |||| |||||| ||||||||||| | ||| ||||| || || |||||| | ||| Sbjct 5228228 TTTAATTTGAACAAATTAGAGTGCTTAAACCAGGCAGTGTTAGCCTGAATACTGTGTGCA 5228169 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGG-TTTCTAGGACCGCCGTAATG 188 ||||||||| ||||||| || |||||||||||||||| ||||| | ||| || Sbjct 5228168 TGGAATAATGGAATAGG-GGTTTGGTTCTATTTTGTTGGTTTTCTGAATTTGAGGTATTG 5228110 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 |||||||| || || || ||| | ||| | || ||| | ||||||||||||| Sbjct 5228109 ATTAATAGTGACAGGCGAGGGCATTCGTAGTGCGACGTTAGATGCGAAATTCTTGGATCG 5228050 Query 249 ATTGAAGAC 257 | |||||| Sbjct 5228049 TTGGAAGAC 5228041 >seq532 Length=192510 Score = 84.2 bits (92), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 5/136 (4%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||| || | |||| || | | | | || ||||||||||| ||||||||||| | Sbjct 98765 TGCTCTTAACCGAGTGTCGAGGTGGGTCGGCACGTTTACTTTGAACAAATTAGAGTGCTT 98824 Query 100 AAAGCAGGC---CTTTGCTCGAATAC-ATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 ||||| ||| || | | |||| | |||||||||||| ||||||||| | ||| Sbjct 98825 AAAGCCGGCAGTGTTAGTCTGTATACTGTGGGCATGGAATAATGGAATAGGACCT-AGGT 98883 Query 156 TCTATTTTGTTGGTTT 171 |||||||||||||||| Sbjct 98884 TCTATTTTGTTGGTTT 98899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915083440128