Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq7322 295 1e-77 seq12 223 6e-56 seq532 199 6e-49 seq6308 129 9e-28 seq5176 120 5e-25 seq1383 113 7e-23 >seq7322 Length=3513 Score = 295 bits (326), Expect = 1e-77 Identities = 226/263 (86%), Gaps = 10/263 (4%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3178 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 3119 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 3118 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 3061 Query 120 CCACCAAC---CATAGTCG-ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGG 175 || | | || || || | ||| |||||||| | ||||||||||||||| ||| Sbjct 3060 CCGCGGAGGGTCACCTCCGCATAG--CTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGG 3003 Query 176 AATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAAT 235 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 3002 AATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAAT 2943 Query 236 CAAGAAAGAGCTATCAATCTGTC 258 |||||||||||| ||| |||||| Sbjct 2942 CAAGAAAGAGCTCTCAGTCTGTC 2920 >seq12 Length=46368093 Score = 223 bits (246), Expect = 6e-56 Identities = 207/261 (79%), Gaps = 18/261 (7%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 24068529 TCCTTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGAATCACAGACCTGCTATTG 24068470 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCA-------GCCA-- 122 | |||| || | |||| |||||| ||||||||||| || | ||| Sbjct 24068469 C-TCAATCT-CGTGCGGCTAGAAGCCGCCTGTCCCTCTAAGRAGATAATGTGTCGCCGGT 24068412 Query 123 ----CCAACCATAGT-CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 | || ||| ||||| ||| | |||| || ||||||||||||||||||| Sbjct 24068411 AGCGCTAAGGATACCGCGATGA--CTAGCWAACAGGYTAGAGTCTCGTTCGTTATCGGAA 24068354 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||| Sbjct 24068353 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACTCACCGAATCA 24068294 Query 238 AGAAAGAGCTATCAATCTGTC 258 ||| |||| |||||||||||| Sbjct 24068293 AGAGAGAGTTATCAATCTGTC 24068273 >seq532 Length=192510 Score = 199 bits (220), Expect = 6e-49 Identities = 201/260 (77%), Gaps = 16/260 (6%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| |||||||||||| |||| ||||||||||||||| ||||||||||||||||||||| Sbjct 107312 TCCTTCAGTGTAGCGCACGTGTGGCCCAGAACATCTATGGGCATCACAGACCTGTTATTK 107253 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG-----------CCAGC 120 | |||| || | |||| || ||| ||||||||||||| || | Sbjct 107252 C-TCAATCT-CGTGCGGCTAGACGCCGCCTATCCCTCTAAGAAGATTATGTGTCGCCGGT 107195 Query 121 --CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 | | || ||| || ||| ||| |||| || ||||| || ||| ||||||| Sbjct 107194 AGCGCTAAGGATAC-CGGGACRACTAGTTAACAGGCTAGAGTCTCCTTAGTTGTCGGAAT 107136 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 |||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 107135 TAACCAGACAAATCGCTCCACCAACTAAGAACGGCCGTGCACCACCACCCACCGAATCAA 107076 Query 239 GAAAGAGCTATCAATCTGTC 258 ||||||||| |||||||||| Sbjct 107075 GAAAGAGCTCTCAATCTGTC 107056 >seq6308 Length=6402 Score = 129 bits (142), Expect = 9e-28 Identities = 145/187 (78%), Gaps = 14/187 (7%) Strand=Plus/Plus Query 33 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTG--GCT 90 ||||||||||||| |||||||||||||||||||||||||| |||| || | || ||| Sbjct 805 CGGCCCAGAACATMTAAGGGCATCACAGACCTGTTATTGC-TCAATCT---AGTGCTGCT 860 Query 91 GGAAGCCAATAGTCCCTCTAAGAAGCCAGC--CACCAACCATAGTCGATGGGGCTATTTA 148 ||||||| |||||| | | || | | | || ||| || | ||| ||| Sbjct 861 GGAAGCCGCCTGTCCCT-TCTGTCGCYGGTAGCGCTAAGGATAC-CGGGACGACTAGTTA 918 Query 149 GCAGGTTA---AG-GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACT 204 |||| || || |||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 919 ACAGGCTAGATAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACT 978 Query 205 AAGAACG 211 ||||||| Sbjct 979 AAGAACG 985 >seq5176 Length=13017 Score = 120 bits (132), Expect = 5e-25 Identities = 139/184 (76%), Gaps = 14/184 (8%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 11044 TCCTTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGCCATCACAGACCTGTTATTG 10985 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCA----GCCACCAA- 126 ||||| ||| |||| |||||| |||||||||||||| | | | | | Sbjct 10984 -CTCAATCTT-GTGCGGCTAGAAGCCGCCTGTCCCTCTAAGAAGATAATTTGTCGTCGAT 10927 Query 127 ----CCATAG---TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | | || || || ||| ||| |||| || |||||||||||||| |||||| Sbjct 10926 AGCGCTAAAGATACCGGGAGGACTAGTTAACAGGCTAGAGTCTCGTTCGTTATTGGAATT 10867 Query 180 AACC 183 |||| Sbjct 10866 AACC 10863 >seq1383 Length=91128 Score = 113 bits (124), Expect = 7e-23 Identities = 89/104 (86%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 43005 TCCTTCAGTGTAGTGCACGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 42946 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||||| | || |||| |||||| |||||||||||||| Sbjct 42945 -CTCAATC-TCGTGCGGCTAGAAGCCGCCTGTCCCTCTAAGAAG 42904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796701690816