Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13]
12,736 sequences; 1,042,628,579 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq7322 295 1e-77
seq12 223 6e-56
seq532 199 6e-49
seq6308 129 9e-28
seq5176 120 5e-25
seq1383 113 7e-23
>seq7322
Length=3513
Score = 295 bits (326), Expect = 1e-77
Identities = 226/263 (86%), Gaps = 10/263 (4%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3178 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 3119
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119
|||||||||||||||||||||| | | || |||| | |||||||||||||||||| |
Sbjct 3118 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 3061
Query 120 CCACCAAC---CATAGTCG-ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGG 175
|| | | || || || | ||| |||||||| | ||||||||||||||| |||
Sbjct 3060 CCGCGGAGGGTCACCTCCGCATAG--CTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGG 3003
Query 176 AATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAAT 235
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 3002 AATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAAT 2943
Query 236 CAAGAAAGAGCTATCAATCTGTC 258
|||||||||||| ||| ||||||
Sbjct 2942 CAAGAAAGAGCTCTCAGTCTGTC 2920
>seq12
Length=46368093
Score = 223 bits (246), Expect = 6e-56
Identities = 207/261 (79%), Gaps = 18/261 (7%)
Strand=Plus/Minus
Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71
||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 24068529 TCCTTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGAATCACAGACCTGCTATTG 24068470
Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCA-------GCCA-- 122
| |||| || | |||| |||||| ||||||||||| || | |||
Sbjct 24068469 C-TCAATCT-CGTGCGGCTAGAAGCCGCCTGTCCCTCTAAGRAGATAATGTGTCGCCGGT 24068412
Query 123 ----CCAACCATAGT-CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177
| || ||| ||||| ||| | |||| || |||||||||||||||||||
Sbjct 24068411 AGCGCTAAGGATACCGCGATGA--CTAGCWAACAGGYTAGAGTCTCGTTCGTTATCGGAA 24068354
Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237
||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||
Sbjct 24068353 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACTCACCGAATCA 24068294
Query 238 AGAAAGAGCTATCAATCTGTC 258
||| |||| ||||||||||||
Sbjct 24068293 AGAGAGAGTTATCAATCTGTC 24068273
>seq532
Length=192510
Score = 199 bits (220), Expect = 6e-49
Identities = 201/260 (77%), Gaps = 16/260 (6%)
Strand=Plus/Minus
Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71
||| |||||||||||| |||| ||||||||||||||| |||||||||||||||||||||
Sbjct 107312 TCCTTCAGTGTAGCGCACGTGTGGCCCAGAACATCTATGGGCATCACAGACCTGTTATTK 107253
Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG-----------CCAGC 120
| |||| || | |||| || ||| ||||||||||||| || |
Sbjct 107252 C-TCAATCT-CGTGCGGCTAGACGCCGCCTATCCCTCTAAGAAGATTATGTGTCGCCGGT 107195
Query 121 --CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178
| | || ||| || ||| ||| |||| || ||||| || ||| |||||||
Sbjct 107194 AGCGCTAAGGATAC-CGGGACRACTAGTTAACAGGCTAGAGTCTCCTTAGTTGTCGGAAT 107136
Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238
|||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 107135 TAACCAGACAAATCGCTCCACCAACTAAGAACGGCCGTGCACCACCACCCACCGAATCAA 107076
Query 239 GAAAGAGCTATCAATCTGTC 258
||||||||| ||||||||||
Sbjct 107075 GAAAGAGCTCTCAATCTGTC 107056
>seq6308
Length=6402
Score = 129 bits (142), Expect = 9e-28
Identities = 145/187 (78%), Gaps = 14/187 (7%)
Strand=Plus/Plus
Query 33 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTG--GCT 90
||||||||||||| |||||||||||||||||||||||||| |||| || | || |||
Sbjct 805 CGGCCCAGAACATMTAAGGGCATCACAGACCTGTTATTGC-TCAATCT---AGTGCTGCT 860
Query 91 GGAAGCCAATAGTCCCTCTAAGAAGCCAGC--CACCAACCATAGTCGATGGGGCTATTTA 148
||||||| |||||| | | || | | | || ||| || | ||| |||
Sbjct 861 GGAAGCCGCCTGTCCCT-TCTGTCGCYGGTAGCGCTAAGGATAC-CGGGACGACTAGTTA 918
Query 149 GCAGGTTA---AG-GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACT 204
|||| || || |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 919 ACAGGCTAGATAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACT 978
Query 205 AAGAACG 211
|||||||
Sbjct 979 AAGAACG 985
>seq5176
Length=13017
Score = 120 bits (132), Expect = 5e-25
Identities = 139/184 (76%), Gaps = 14/184 (8%)
Strand=Plus/Minus
Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 11044 TCCTTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGCCATCACAGACCTGTTATTG 10985
Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCA----GCCACCAA- 126
||||| ||| |||| |||||| |||||||||||||| | | | | |
Sbjct 10984 -CTCAATCTT-GTGCGGCTAGAAGCCGCCTGTCCCTCTAAGAAGATAATTTGTCGTCGAT 10927
Query 127 ----CCATAG---TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179
| | || || || ||| ||| |||| || |||||||||||||| ||||||
Sbjct 10926 AGCGCTAAAGATACCGGGAGGACTAGTTAACAGGCTAGAGTCTCGTTCGTTATTGGAATT 10867
Query 180 AACC 183
||||
Sbjct 10866 AACC 10863
>seq1383
Length=91128
Score = 113 bits (124), Expect = 7e-23
Identities = 89/104 (86%), Gaps = 2/104 (2%)
Strand=Plus/Minus
Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71
||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 43005 TCCTTCAGTGTAGTGCACGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 42946
Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115
||||| | || |||| |||||| ||||||||||||||
Sbjct 42945 -CTCAATC-TCGTGCGGCTAGAAGCCGCCTGTCCCTCTAAGAAG 42904
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796701690816
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |